CN191925 | Citrus Genome Database

Overview


Name	CN191925
Unique Name	CN191925
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	353

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CN191925 vs. ExPASy Swiss-Prot

BLAST of CN191925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86


Match Name	E-value	Identity	Description
UBIQ_WHEAT	7.271e-31	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	7.271e-31	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	7.271e-31	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	7.271e-31	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	7.271e-31	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	7.271e-31	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	7.271e-31	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	7.271e-31	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	7.271e-31	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	7.271e-31	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0006B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN191925 ID=CN191925; Name=CN191925; organism=Citrus sinensis; type=EST; length=353bp
GAGGCAACAAATCTCTCCAATTGTCTCGCTAAGAAACTTTTAAACGATGC
AGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAG
AGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGG
AATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGAAACAGCTCGAAGA
CGGCCGCACCTTGGCCGATTACAATATCCAAAAGGAATCGACGCTTCATC
TTGTGCTTCGTCTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACC
GGCAAGACCATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGT
CAA