CN191923

Overview
NameCN191923
Unique NameCN191923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD_ARATH (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 2.454e-70
Identity = 131/180 (72.78%), Postives = 151/180 (83.89%), Query Frame = 3
Query:   39 MQRLLGARSLCASFFTKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A +ID++NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+N
Sbjct:    1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILN 179          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD2_SOLTU (Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.376e-65
Identity = 125/163 (76.69%), Postives = 138/163 (84.66%), Query Frame = 3
Query:   90 KKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            +K   AAFS TSLLFDDTQ QFKESV QFA+ENIAP A KID++N FPQDVNLWKLMG+FNL GIT P+E          HCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK KYLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++N
Sbjct:   10 QKPQFAAFS-TSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLN 171          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD1_SOLTU (Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.031e-65
Identity = 122/183 (66.67%), Postives = 146/183 (79.78%), Query Frame = 3
Query:   39 MQRLLGARSLCASF---FTKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            M +L   RSL ++    F   +   AAFS TSLL DDTQ QFKESV +FA+ENIAP A KID++NSFP+++NLWKLMG+FNLHGITAP+E          HCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++N
Sbjct:    1 MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEKIDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLN 182          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD_PONAB (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.148e-43
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 3
Query:  138 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            + Q Q +++V +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+N
Sbjct:   44 EEQRQLRQTVAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILN 190          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD_HUMAN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.557e-43
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = 3
Query:  138 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            + Q Q ++++ +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+N
Sbjct:   44 EEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILN 190          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD_MOUSE (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.269e-42
Identity = 82/148 (55.41%), Postives = 109/148 (73.65%), Query Frame = 3
Query:  135 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            ++ Q Q + ++ +F +EN+AP+A +IDQ+N F      WK +G+  + GITAP +          H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV MK KA++    Y++N
Sbjct:   44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLN 191          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD_RAT (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.692e-42
Identity = 82/148 (55.41%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  135 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            ++ Q Q + ++ +F +EN+AP+A +IDQSN F      WK +G+  + GITAP +          H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV M+ KA++    Y++N
Sbjct:   44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLN 191          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: IVD_BOVIN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.298e-42
Identity = 82/148 (55.41%), Postives = 109/148 (73.65%), Query Frame = 3
Query:  135 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            ++ Q Q +++V +F +E++AP+A +IDQSN F      WK +GN  + GITAP +          + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    Y++N
Sbjct:   46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLN 193          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.045e-20
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  144 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            Q+  ++ V  FAR+ IAP A  +++++ FP    L K MG   L GI  P++          + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++EP++GSD   ++  A + +G Y++N
Sbjct:    7 QVMMRKMVRDFARKEIAPAAEIMEKTDEFP--FQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLN 149          
BLAST of CN191923 vs. ExPASy Swiss-Prot
Match: ACDC_BACSU (Probable acyl-CoA dehydrogenase yngJ OS=Bacillus subtilis GN=yngJ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  144 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 578
            Q   +E V  FA++ IAP A  +DQ+  FP     +K MG   L GI  P+E          + +A+EE+ +A GS GLSY A  +L  + L   G+  QK  +L  L SG  +G+  ++EPNAGSD  G + KA      Y+IN
Sbjct:    9 QQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQT--FKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVIN 151          
The following BLAST results are available for this feature:
BLAST of CN191923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
IVD_ARATH2.454e-7072.78Isovaleryl-CoA dehydrogenase, mitochondrial OS=Ara... [more]
IVD2_SOLTU2.376e-6576.69Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fra... [more]
IVD1_SOLTU9.031e-6566.67Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=S... [more]
IVD_PONAB1.148e-4358.50Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pon... [more]
IVD_HUMAN2.557e-4357.82Isovaleryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
IVD_MOUSE1.269e-4255.41Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
IVD_RAT3.692e-4255.41Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rat... [more]
IVD_BOVIN6.298e-4255.41Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
ACDB_BACSU1.045e-2035.17Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
ACDC_BACSU8.849e-2037.93Probable acyl-CoA dehydrogenase yngJ OS=Bacillus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006B05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191923 ID=CN191923; Name=CN191923; organism=Citrus sinensis; type=EST; length=578bp
GAGGGAAAGTAAAAAAGGGAAAAAGGTAAGAGAGAAGAATGCAGAGGCTC
TTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGAAGAAGAAACA
TTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGACACTCAATTAC
AGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACATTGCTCCTCGT
GCGGCAAAAATTGACCAATCAAATTCGTTCCCACAGGATGTTAATTTATG
GAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAAT
ACGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAA
ATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAA
TTTGTGCATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACA
AGTACTTGCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATG
AGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGA
TCGCGTAGATGGGGGTTATATTATAAAT
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