CN191916

Overview
NameCN191916
Unique NameCN191916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.993e-58
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:  343 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQM 696
            MAL NIGA NR DAFYRYKMP+MITKIEGRGNGIKTN+VNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTG SLVNG+HDTAKLAGLLE FIKKYVQCYGCGNPETEI+I+KTQM
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGAHDTAKLAGLLEVFIKKYVQCYGCGNPETEILISKTQM 118
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.558e-57
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:  343 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQM 696
            MAL NIGA NR DAFYRYKMP+M+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFGCELGAQSKFDEK GTSLVNG+HDT+KLAGLLENFIKKYVQCYGCGNPETEI+ITKTQM
Sbjct:    1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILITKTQM 118
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.722e-56
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:  343 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQM 696
            MAL NIGA NR DAFYRYKMPKM+TK EG+GNGIKTNI+N V+IAKALARP SYTTKYFGCELGAQSKFDEKTGTSLVNG+H+T+KLAGLLENFIKK+VQCYGCGNPETEIIITKTQM
Sbjct:    1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFGCELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIIITKTQM 118
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.116e-55
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:  343 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQM 696
            MAL NIGA N  DAFYRYKMP+M+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFGCELGAQSKFDEKTGTS VNG+H+TAKLAGLLE FIKKYVQCYGCGNPETEI+ITK QM
Sbjct:    1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQM 118
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_RAT (Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  379 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEI 675
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDL 109
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_PONAB (Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  379 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEI 675
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDL 109
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_MOUSE (Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  379 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEI 675
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDL 109
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_HUMAN (Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  379 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEI 675
            D FYRYKMP++I K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K    +VNGSH+  KL  +L+ FIKK+V C  C NPET++
Sbjct:   11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDL 109
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_CAEEL (Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:  379 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQM 696
            D FYRYKMPK+  K+EG+GNGIKT I NM +IAKAL RP  Y TKYFGCELGAQ+ FD K    +VNG HD  KL  +L+ FIKK+V C  C NPET++ + K  +
Sbjct:   11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDGFIKKFVLCKSCENPETQLFVRKNNI 116
[Close]
BLAST of CN191916 vs. ExPASy Swiss-Prot
Match: IF5_DROME (Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1 
Query:  343 MALLNIGADNRG--DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT 684
            MA +N+   NR   D FYRYKMP++  K+EG+GNGIKT +VNM ++A+A+ RPA+Y TKYFGCELGAQ+ FD K    +VNGSHD  KL  LL+ FI+K+V C  C NPET + ++
Sbjct:    1 MATVNV---NRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLCPECDNPETNLTVS 113
The following BLAST results are available for this feature:
BLAST of CN191916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
IF5_MAIZE6.993e-5891.53Eukaryotic translation initiation factor 5 OS=Zea ... [more]
IF5Y_ARATH1.558e-5788.98Probable eukaryotic translation initiation factor ... [more]
IF5Z_ARATH1.722e-5688.14Probable eukaryotic translation initiation factor ... [more]
IF5_PHAVU1.116e-5588.14Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5_RAT7.785e-3364.65Eukaryotic translation initiation factor 5 OS=Ratt... [more]
IF5_PONAB7.785e-3364.65Eukaryotic translation initiation factor 5 OS=Pong... [more]
IF5_MOUSE7.785e-3364.65Eukaryotic translation initiation factor 5 OS=Mus ... [more]
IF5_HUMAN7.785e-3364.65Eukaryotic translation initiation factor 5 OS=Homo... [more]
IF5_CAEEL8.608e-3259.43Eukaryotic translation initiation factor 5 OS=Caen... [more]
IF5_DROME1.468e-3156.03Eukaryotic translation initiation factor 5 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006B01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191916 ID=CN191916; Name=CN191916; organism=Citrus sinensis; type=EST; length=698bp
GAGGCGCATTCTGTGTTGTGCCAACACTTGAATCGTATTTTCAAGGTGAA
GCACGTCAACATTGAAGTTTCTTTTATGTCCATACAGGCCATTTCCTGTT
TGGGATCGGTTGGGTTGCTTGGAGAATATTGTCCTTCATCCAGAAAAAAG
ATTAGACCTCTGTCTGAAAGATTTGGCTGTATGCATCTCGTGCCATTTCA
GGAATACCCAGAAGAGTTTTGTGGTTGCAGTCACTGGCAACCTTTCCTAA
CCGCTGAACATTGTTGTTCTCTTGTGCAAGAAGTTTTAGAAGACAGCACT
ATTTCCTACGCTTGACATTTGTTCTGTTTCTTTGAGGTCAAGATGGCTTT
GCTGAACATTGGTGCTGATAACCGGGGTGATGCCTTCTACCGGTATAAGA
TGCCTAAAATGATTACCAAAATTGAGGGCCGTGGGAATGGCATCAAGACA
AATATTGTGAACATGGTTGATATTGCAAAGGCTTTAGCAAGGCCAGCTTC
TTACACAACAAAATATTTCGGTTGTGAGCTTGGTGCACAATCTAAATTTG
ACGAGAAAACTGGTACTTCTCTTGTTAATGGATCTCATGATACTGCTAAG
CTTGCAGGTCTTCTTGAGAACTTCATCAAGAAATATGTTCAGTGTTATGG
TTGTGGAAACCCAGAAACTGAGATAATAATCACTAAAACTCAGATGAT
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