CN191891

Overview
NameCN191891
Unique NameCN191891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:534..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191891 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.547e-52
Identity = 86/138 (62.32%), Postives = 104/138 (75.36%), Query Frame = -3
Query:  294 KNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 707
            +NSWG SWGE+GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  308 RNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CN191891 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52
Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = -3
Query:  273 KNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 707
            +NSWG SWGE+GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  316 RNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CN191891 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 76/146 (52.05%), Postives = 96/146 (65.75%), Query Frame = -3
Query:  270 KNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 707
            +NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  197 RNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CN191891 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.097e-41
Identity = 77/143 (53.85%), Postives = 91/143 (63.64%), Query Frame = -3
Query:  297 KNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 707
            +NSWG  WGE+GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  321 RNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN191891 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 67/142 (47.18%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  294 KNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 707
            +NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  338 RNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CN191891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ1.547e-5262.32Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH4.501e-5257.93Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC3.819e-4352.05Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ6.097e-4153.85Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.900e-3447.18Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006A05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191891 ID=CN191891; Name=CN191891; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGTTCAGATT
CAACGCAGATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAAT
AAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAA
ATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAA
TATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATA
ATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTA
GCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCAT
CAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGC
AGCTATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCC
CATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCT
CTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAG
ATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGA
TATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGCCAC
GTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCCATG
AATTCTTCA
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