CN191880

Overview
NameCN191880
Unique NameCN191880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN191880_ssr30 microsatellite CN191880_ssr30:30..41. BLAST: Citrus ESTs to Prunus persica proteins V1
CN191880_ssr78 microsatellite CN191880_ssr78:78..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3480 contig Csv1_Contig3480:117..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.433e-86
Identity = 162/205 (79.02%), Postives = 168/205 (81.95%), Query Frame = 3
Query:   60 FHHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 668
            +HHL+        +FW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAA LGG  +V  TASGVPYYYPPMGQP   AGPGGMMIGRPA+DP GVYVQPPSQAWQSVWQT                   NLDGQG
Sbjct:   33 YHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG 234          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 9.610e-83
Identity = 157/208 (75.48%), Postives = 164/208 (78.85%), Query Frame = 3
Query:   60 FHHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE-----AAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXXXPANLDGQG 668
            +HHL+        MFW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E     A G GGMV   ASGVPYYYPPMGQP   A PGGMMIGRPA+DP+GVY QPPSQAWQSVWQ  A                 NLD QG
Sbjct:   46 YHHLLQQQQQQLQMFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQP---AVPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHGNLDSQG 250          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.727e-53
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 3
Query:  102 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTP 596
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G  G   ATA+G PY Y P G  T   G  GM++G P   P   Y+  P      +WQ P
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPG--TAPIGNPGMVMGNPGAYPPNPYMGQP------MWQQP 208          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.161e-50
Identity = 106/169 (62.72%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  102 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAG---LGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPA 599
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G    G +  A A+G PY Y P G  T   G  GM++G P     G Y   P    Q +WQ  A
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAG--TAPIGNPGMVMGNPG----GAYPPNPYMG-QPMWQQQA 223          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 9.079e-49
Identity = 93/136 (68.38%), Postives = 108/136 (79.41%), Query Frame = 3
Query:   63 HHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGL-GGMVGATASGVPYYY 467
            HH          MFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E  G+  G + +     PYYY
Sbjct:   45 HHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSPPYYY 180          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.417e-38
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 3
Query:  108 SYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-IKDEAAGLGGMVGATASGVP-YYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAW 575
            +Y  +++E  +DFKN QLPLARIKKIMKAD DV M+SAEAPI+FAKACE+FI++LT+RSWL AEENKR TLQK+DI+ A+  +  +DFL+D+VP+DE I     G   M      GVP YYYPP           G+++G P V  +G+Y   PSQAW
Sbjct:   38 NYWIEQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPDGGGVPQYYYPP-----------GVVMGTPMVG-SGMYA--PSQAW 181          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  102 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 506
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  102 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 506
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  102 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 506
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
BLAST of CN191880 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  102 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGAT-ASGVPYYYPPMGQPTGTAGPG 506
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K            T A  V YY+    QPT     G
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQG 159          
The following BLAST results are available for this feature:
BLAST of CN191880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC1_ARATH1.433e-8679.02Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH9.610e-8375.48Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC3_ARATH2.727e-5364.24Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC9_ARATH2.161e-5062.72Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC2_ARATH9.079e-4968.38Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC6_ARATH9.417e-3854.43Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC_RAT1.662e-3456.52Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_MOUSE1.662e-3456.52Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN1.662e-3456.52Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN1.662e-3456.52Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005P22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191880 ID=CN191880; Name=CN191880; organism=Citrus sinensis; type=EST; length=764bp
GAGGCTCATACCCACCCCAGCCTCCCTCCGCTGCTGCTGCTGCCACCGCA
ACGGCGCCGTTTCATCACCTAATCCAACAGCAGCAGCAGCAGCTCCAAAT
GTTCTGGTCCTACCAGCGGCAAGAAATCGAACAAGCGAACGACTTCAAGA
ACCACCAGCTGCCGCTCGCCCGCATCAAGAAAATCATGAAGGCCGACGAG
GACGTTCGCATGATCTCCGCCGAGGCCCCGATTCTGTTCGCCAAGGCCTG
CGAGTTGTTCATCCTCGAGCTCACGATCCGCTCGTGGCTCCACGCCGAGG
AGAACAAGCGCAGGACTCTACAGAAGAACGACATCGCGGCCGCCATCACC
AGGACCGACATCTTCGACTTCTTGGTCGATATTGTGCCTAGGGATGAGAT
TAAGGACGAGGCTGCCGGCTTGGGCGGCATGGTGGGGGCCACTGCCAGTG
GGGTTCCGTATTATTATCCTCCAATGGGGCAGCCCACTGGGACTGCTGGC
CCCGGTGGGATGATGATTGGCCGGCCGGCTGTCGATCCTACTGGTGTTTA
CGTGCAGCCGCCTAGTCAGGCTTGGCAGTCCGTTTGGCAGACGCCCGCGG
GGACTGGGGACGACGGCTCTTATGGCAGTGGTGGGAGCGGGGGACCTGCC
AATCTTGATGGTCAAGGCTAGGTTAAACAAAAACAACTAATATGCAGATG
TTATGCTGCTGTGTGATGCAGTAGAAAGGCATTGGAACCCCTGCCGATGC
TACATGGAATTTTG
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