CN191863

Overview
NameCN191863
Unique NameCN191863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6451 contig Csv1_Contig6451:135..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.135e-54
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = -3
Query:  361 NTKTISQSDHFEFNFKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 702
            NTKT+SQ+D FEFN KFTDRMRRIKIPLPPVDERKK+VEDVDKDRRYAIDAA+VRIMK RKVLGH QLVSECVEQLSRMFKPDIKAIKKR ED ITRD+LERDKENPNMFRYLA
Sbjct:  625 NTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  361 KTISQSDHFEFNFKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 696
            K +   D F FN +F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK LGH+ LVSE   QL    KP    +KKR E  I RD++ERDK+NPN + Y+A
Sbjct:  646 KEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  361 KTISQSDHFEFNFKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 696
            K +   D F FN  F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK LGH+ LVSE   QL    KP    +KKR E  I RD++ERDK++PN + Y+A
Sbjct:  646 KEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = -3
Query:  361 TKTISQSDHFEFNFKFTDRMRRIKIPL-----PPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 699
            +K+I +SD F FN KF  ++ R+K+        PV+E K+  + VD+DR++ I+A++VRIMK RK L H  LVSE ++QL   F P+   +KKR E  I R++LER K++  ++ Y+A
Sbjct:  653 SKSIDESDVFAFNTKFKSKLFRVKVMAVVQKETPVEE-KETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 55/116 (47.41%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  361 KTISQSDHFEFNFKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 696
            K I   D F  N  F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK L H+ LVSE   QL    KP    +KKR E  I RD++ERDKENPN + Y+A
Sbjct:  782 KDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = -3
Query:  361 TKTISQSDHFEFNFKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 699
            TK I ++D F FN KF+ ++ +IK+        V+E +K  E++  DR+Y +DAA+VRIMK RK L H+ L+SE V  L   F+P    +KKR E  I +++L RD EN  ++ Y+A
Sbjct:  688 TKVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVEENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSLLK--FQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = -3
Query:  361 KTISQSDHFEFNFKFTDRMRRIKIP------LPPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 696
            + ++  D F FN  F   + RIKI       +    ERK+ +E VD+ R++  DA +VR+MK RKV  H+QL++E   QL+  F P    IK+R E  I R++L+R  +N  ++ YLA
Sbjct:  668 REVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  361 QSDHFEFNFKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 684
            +++ F  N KFT++  R++I        V+E K++ E+V+ DR+Y IDAA+VRIMK RK L H  L++E ++QL   F      IKKR E  I R+++ RD E  + + Y+A
Sbjct:  731 KNEKFVVNSKFTEKRCRVRIAQVNIKTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -3
Query:  361 TKTISQSDHFEFNFKFTDRMRRIKIPLPPVD------ERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 699
            +K I     F  N +FT ++ R+KI            ERK+  + VD DR++ I+AA+VRIMK RK + H+ LV+E  +QL   F P    IKKR E  I R++L R  E+  ++ Y+A
Sbjct:  650 SKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN191863 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -3
Query:  361 TKTISQSDHFEFNFKFTDRMRRIKIPLPPVD------ERKKIVEDVDKDRRYAIDAALVRIMKFRKVLGHHQLVSECVEQLSRMFKPDIKAIKKRREDFITRDFLERDKENPNMFRYLA 699
            +K I     F  N +FT ++ R+KI            ERK+  + VD DR++ I+AA+VRIMK RK + H+ LV+E  +QL   F P    IKKR E  I R++L R  E+  ++ Y+A
Sbjct:  650 SKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
The following BLAST results are available for this feature:
BLAST of CN191863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CUL1_ARATH8.135e-5490.35Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4A_HUMAN1.712e-1947.41Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE8.497e-1946.55Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL3_DICDI8.497e-1942.37Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL4B_HUMAN2.472e-1847.41Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4_DICDI1.357e-1641.88Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL3_SCHPO5.155e-1638.14Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4_CAEEL5.699e-1540.18Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]
CUL3_XENTR9.722e-1538.66Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA9.722e-1538.66Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005P11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191863 ID=CN191863; Name=CN191863; organism=Citrus sinensis; type=EST; length=704bp
TTTTTTTTTTTTTTTTTGAAAAATCAATAACGCTTTTCCTGTTAATTTTC
TTTTCCTTTTTCCCCTTTTTTGGGGTTCCTCCAGCTCCAAAAACGAATGG
TATGATGTATTACACAAAACTGAGGGAAAGTCCACAAAAATTCTCCAGTC
ACTGGGAGGTACCATCTTTCCTAGTGTCAAAAGAAGCCCCCACCCCAACT
ACCCAGACAGCATTTACAGCATCTTTTATGTTTTCAACTTCAATTTCCAT
GCAGCCCCCACCATCATCAAATCAAAAATTTTACTTCCCAGCTCTCTCTA
TGCCTTTTTCAGCGCATGCATCTCGGCTCTCACTCCGCCTGCCTTTTCAT
CATCAAATTAGGCCAAGTACCTAAACATGTTAGGGTTTTCCTTGTCCCTC
TCCAAAAAATCTCTTGTGATAAAATCTTCCCTCCTCTTCTTGATTGCTTT
AATATCAGGCTTGAACATGCGACTCAACTGCTCAACACACTCGGACACCA
ACTGGTGATGACCCAAAACTTTCCGAAACTTCATTATGCGCACTAATGCA
GCATCAATAGCATATCGTCTGTCTTTGTCTACATCTTCAACAATTTTCTT
CCTTTCATCAACCGGGGGGAGAGGAATCTTTATCCTCCTCATTCTGTCTG
TAAACTTAAAGTTGAACTCAAAGTGGTCACTTTGGGAAATGGTTTTCGTA
TTTG
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