CN191823

Overview
NameCN191823
Unique NameCN191823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  162 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIE 440
            K  T +E+  HN+  DLWI + GKVY++T+W   HPGG+  LL  AG+D T+ F +YHP T     DK ++   ++ +E+  IS      Y+E
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMT-----DKHYS--LIKQYEIGYISSYEHPKYVE 98          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  147 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYI 437
            M +++K ++ EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   +DK F G      E+   S    R Y+
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIG------EIDSSSVPATRTYV 92          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 3
Query:  132 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKD 419
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP       D  F G +++   + E++ +
Sbjct:    9 EGAAEREVPMPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSTQHPGGQRVIGHYAGEDATDAFRAFHP-------DLKFVGKFLKPLLIGELAPE 97          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  147 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYYVQDFEVSEI 410
            M  E K  T  E+  HN A+D W+ I GKVYDVT++   HPGGD  LL+  G+D TD F    H  +A   LD+    YYV D + + I
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDE----YYVGDIDSATI 85          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  147 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYYVQDFEVSEI 410
            M +EKK +  EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   ++K    YY+ + + S +
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEK----YYIGEIDSSTV 85          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: FADS2_DANRE (Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.020e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  171 TAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRR 428
            T EE++ H K  D W+ ++ KVY+V++W K+HPGG   L + AG+D T+AF A+HP    Q + K      + + E SE S+D ++
Sbjct:   22 TWEEVQKHTKHGDQWVVVERKVYNVSQWVKRHPGGLRILGHYAGEDATEAFTAFHPNL--QLVRKYLKPLLIGELEASEPSQDRQK 105          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.332e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  132 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYYV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHV 479
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F K  HV
Sbjct:    9 EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLF-KTNHV 131          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.332e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  132 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYYV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHV 479
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F K  HV
Sbjct:    9 EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLF-KTNHV 131          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  162 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP 338
            K  +  EL  HN   D W+++ GKVYD+T W   HPGG   LL  AG+DVT+ F +YHP
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHP 72          
BLAST of CN191823 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 3
Query:  162 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-HPGTAWQYLDKLFTGYYVQDFEVSEI 410
            K  T  E+  HN ++D W+ I GKVYDVT++ + HPGGD  LL+  G+D TD F    H  +A   LD+    YYV D + S I
Sbjct:    3 KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDE----YYVGDIDSSSI 82          
The following BLAST results are available for this feature:
BLAST of CN191823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD5B_DICDI1.573e-1239.78Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
CYB51_ARATH2.054e-1239.80Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
FADS2_MACFA7.807e-1235.42Fatty acid desaturase 2 OS=Macaca fascicularis GN=... [more]
CYB5_TOBAC7.807e-1243.82Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_BRAOB7.807e-1241.57Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
FADS2_DANRE1.020e-1139.53Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE... [more]
FADS2_PONAB1.332e-1135.48Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 P... [more]
FADS2_HUMAN1.332e-1135.48Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P... [more]
FAD5A_DICDI2.967e-1149.15Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
CYB5_BOROF2.967e-1144.05Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005O08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191823 ID=CN191823; Name=CN191823; organism=Citrus sinensis; type=EST; length=545bp
GAGGCGAAAGCAAACCAAATCATCACATCCCTTGCTATTTCACTTTGAGC
AAAACTTGCGGGATTTTCTTGATTTGATTTTGCTTCCCAGGTGGCATAAC
CTATCTTCCCCCACAACACTTTCCAATTTTTCAATCTGCTGCCTTAATGG
AGGCCGAGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCACAACAAG
GCAGAAGATTTGTGGATCTCTATACAGGGGAAAGTTTACGACGTTACAGA
ATGGGCAAAACAACATCCTGGCGGCGACGTTCCGCTCTTGAATTTGGCTG
GCCAAGATGTTACCGATGCGTTTATAGCGTATCATCCAGGAACCGCTTGG
CAATATCTTGATAAACTTTTTACAGGCTATTATGTTCAAGATTTCGAAGT
ATCTGAAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTTGCCAAAC
AGGGTATGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCTTACATGT
GTAGCATTGATGTTTGTTGTTGTGGTTTATGGCGTTTTGTGCTGT
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