CN191822

Overview
NameCN191822
Unique NameCN191822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = -3
Query:  321 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 731
            I+G L+F  +   L S+   W            VT + HI   ++  A           DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI+P+V+ LC KH + Y+      A +  IR+LR
Sbjct:  316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLR 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS1_HUMAN (Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 57/185 (30.81%), Postives = 90/185 (48.65%), Query Frame = -3
Query:  321 SYQHWTFYPVMCVARVNLYLQTLLLLF--SKRKVPDRALNIMGTLVFW-TWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 845
            ++QH  F+ +   A + LY Q  +  F   ++K  D A  I   + F+ T+ PLL       + ++  + E   FV     VT + HI   ++H          +  DW   Q   T ++  S++ DWF G L FQ+EHHLFP +PR    K++P+V+ LC KH + Y+S     A    I +L+
Sbjct:  260 NHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFYVRFFLTYVPLLGLKAFLGLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS3_BOVIN (Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  321 LNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 602
            +NH    +  G  K  DW   Q + T ++  S ++DWF G L FQ+EHHLFP +PR   R+++P+V+ LC KH + Y    F  A V  IR+L+
Sbjct:  339 MNHIPREI--GHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLK 430          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 49/151 (32.45%), Postives = 76/151 (50.33%), Query Frame = -3
Query:  321 NIMGTLVFWTWFPLL----------VSYLPNW--PERVMFVMASFTVTAIQHIQFC-LNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 734
            N+   LV   W  LL          +SYLP +  P  ++F +A   + +   +    +NH    +  G  K  DW   Q + T ++  S + +WF G L FQ+EHHLFPR+PR    +++P+V+ LC KH + Y    F  A V  +R+L+
Sbjct:  284 NLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEI--GHEKHRDWVSSQLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLK 432          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = -3
Query:  321 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHI--QFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 731
            I+G LVF  +   L S+   W            VT + HI  +  L+H+            DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI+P+V+ LC KH + Y+      A +  + +L+
Sbjct:  316 ILGALVFLNFIRFLESHWFVW------------VTQMNHIVMEIDLDHY-----------RDWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIVSSLK 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = -3
Query:  321 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 731
            I+G L+F  +   L S+   W            VT + HI   ++  A           DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI+P+V+ LC KH + Y+      A +  IR+L+
Sbjct:  316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLK 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = -3
Query:  321 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHI--QFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 731
            I+G LVF  +   L S+   W            VT + H+  +  L+H+            DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI+P+V+ LC KH + Y+      A +  + +L+
Sbjct:  316 ILGALVFLNFIRFLESHWFVW------------VTQMNHLVMEIDLDHY-----------RDWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALIDIVSSLK 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = -3
Query:  321 IMGTLVFWTWFPLLVSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 731
            I+G L+F  +   L S+   W            VT + HI   ++  A           DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI+P+V+ LC KH + Y+      A +  IR+L+
Sbjct:  316 ILGALLFLNFIRFLESHWFVW------------VTQMNHIVMEIDQEAYR---------DWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLK 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS2_BOVIN (Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = -3
Query:  321 LNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 602
            +NH    +   P +  DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI+P+VR LC KH + Y+      A    I +LR
Sbjct:  340 MNHIVMEIDREPYR--DWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVRSLCAKHGIEYQEKPLLRALQDIIGSLR 431          
BLAST of CN191822 vs. ExPASy Swiss-Prot
Match: FADS1_PAPAN (Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 55/185 (29.73%), Postives = 88/185 (47.57%), Query Frame = -3
Query:  321 SYQHWTFYPVMCVARVNLYLQTLLLLF--SKRKVPDRALNIMGTL-VFWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 845
            ++QH  F+ +   A V  + Q  +  F   ++K  D A  I   + +  T+ PLL       + ++  + E   FV     VT + HI   ++H          +  DW   Q   T ++  S++ DWF G L FQ+EHHLFP +PR    K++P+V+ LC KH + Y+S     A    I +L+
Sbjct:  260 NHQHKYFFLIGPPALVPFFFQWYVFYFVIQRKKWVDLAWMITFYIRLLLTYVPLLGLKAFLGLYFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPMMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431          
The following BLAST results are available for this feature:
BLAST of CN191822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FADS2_MACFA3.466e-1535.04Fatty acid desaturase 2 OS=Macaca fascicularis GN=... [more]
FADS1_HUMAN3.466e-1530.81Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 P... [more]
FADS3_BOVIN5.912e-1540.43Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=... [more]
FADS3_HUMAN7.721e-1532.45Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 P... [more]
FADS2_RAT7.721e-1533.81Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fa... [more]
FADS2_PONAB7.721e-1534.31Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 P... [more]
FADS2_MOUSE7.721e-1533.09Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 P... [more]
FADS2_HUMAN7.721e-1534.31Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P... [more]
FADS2_BOVIN2.246e-1441.49Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=... [more]
FADS1_PAPAN5.005e-1429.73Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005O08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191822 ID=CN191822; Name=CN191822; organism=Citrus sinensis; type=EST; length=850bp
TTTAAAAAAAAGAGAGGCTTAATTGGAATCCGCGAGTCATTATCTGATTA
CAACTGTGAATAAAAAAATATTGCTAGAAAGAGCATTTATTCATCATCCT
ATACGAATGACGACCCCAAGCCAAGAGGCCAAATCAAGAGCCAAAAAAAT
ATTCGTTGGGGGCAAAATAACTTGTGGCTATAAAATCTCGATAGGCATCT
GTTAATGTATTTTATATATTAAAAAAAGAAAAACACAACTCAGCCATGAG
TATTAAGAGCTTCCCAAAGCAAATTCTTGGGGACAGGGTTTGTGAGGTCC
CGAGCTTGCAGAGCAGCACCCCTCAAAGTCCTAATGGTCCACACATTGGC
CTCAAAGAAGGACAAACTTCTGTAAGGCATATTGTGCTTCTTGCAAAGAT
CCCTCACCACCGGCGAAATCTTCCTCAATTGGCACCTTGGCAACCTTGGA
AACAAATGATGCTCTAGCTGAAACTGCAACCCACCATGAAACCAATCCAT
CCAAGATGAGCAAGCAATATCCAATGTCCCACTTGTTTGCTTCTCAAACC
AGTCATTCCCTTTAGGCGGACCAAGATACACATTTGCAGCAAAGTGGTTT
AAACAAAACTGAATGTGTTGGATGGCCGTGACAGTAAAACTTGCCATCAC
AAACATCACCCTTTCAGGCCAGTTTGGTAGATATGAAACTAGAAGTGGGA
ACCAAGTCCAAAAGACAAGAGTACCCATGATGTTCAAGGCTCTATCTGGG
ACCTTACGCTTTGAAAACAATAACAAAAGTGTCTGTAAATATAAATTTAC
TCTGGCCACACACATAACAGGGTAAAATGTCCAATGCTGGTAACTCACAA
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