CN191818

Overview
NameCN191818
Unique NameCN191818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191818 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.927e-27
Identity = 78/181 (43.09%), Postives = 102/181 (56.35%), Query Frame = -2
Query:  304 NAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA-------LQAGDIRHVSKDEXXXXXXAVSDKLHKVKSRRFKR-SAPKPRSKPERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGS-DVDLELSL 819
            NAGP  LRP IF+SLL+EACGRIVNPIYGSVGL+WSG W LCQ AVEAV +GEPV  +++++A       L+  DIRH+SKD+        S  L   K+RR KR S    +++ E  +D        + S   S S   E+     GE    S   V   LA +     GS ++ L+L+L
Sbjct:   55 NAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSD--------EASHDSSLSHQSEIVAAHEGESKE-SESNVSEVLAFSPPAVKGSGEIKLDLTL 226          
BLAST of CN191818 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = -2
Query:  592 NAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL---------QAGDIRHV-SKDE 819
            N GP  LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+         +  DIRHV S+DE
Sbjct:   55 NTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTGQAPPFNNKLCDIRHVSSRDE 140          
BLAST of CN191818 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.040e-21
Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  520 AGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPV--TPLSSESAL-------QAGDIRHVSK------DEXXXXXXAVSDKLHKVKSRRFKRSA 816
            +GP  LRPAIF+SLLYEACGRIVNP+ GSVGLMWSG W  CQAAV+AV  G P+  TPL S SA        +  DIRHV+K      D        V+    K ++ RFKR +
Sbjct:   56 SGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRES 169          
BLAST of CN191818 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = -2
Query:  646 NAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 819
            +A P   RPA+F+SLLYEACGR VNP+ G++G++W+G W++CQAAVE V RG  + P+
Sbjct:   53 SAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110          
BLAST of CN191818 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.259e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = -2
Query:  646 NAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 819
            +A P+   PA+F+SLLYEACGR VNP+ G+VGL+W+G W++CQAAVE V RG  + P+
Sbjct:   53 SAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110          
BLAST of CN191818 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  643 PQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLS 810
            P+  RPA+F+SLL+EACGR VNP+ G+VG++W+  WH+CQAAVE V RG  + P+S
Sbjct:   56 PELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111          
The following BLAST results are available for this feature:
BLAST of CN191818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD41_ARATH4.927e-2743.09LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD40_ARATH1.214e-2567.44LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD42_ARATH4.040e-2151.75LOB domain-containing protein 42 OS=Arabidopsis th... [more]
LBD37_ARATH4.327e-1556.90LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH1.259e-1458.62LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH1.644e-1458.93LOB domain-containing protein 39 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005O06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191818 ID=CN191818; Name=CN191818; organism=Citrus sinensis; type=EST; length=820bp
TGAATTTTTCTCCTGCATATAACAAATGGATTTTGGAAAACAAATCATCT
TTAAAACAAAGAATGCTATAAGTGTATATATGTATATAACCTCTTTCTAT
GTGCTACCTACAATGTACACTTCCGCGGCCAGCCCTGAACAATGAAAAAT
GATCGAATGAACTAAAACCCTCTCATCCAAGCCGTCAAAACTGCTAATAA
CATGGACTAGGCCGCACCAGATTGCTATTAAACAATCACCGCACACGTGG
CATCATCAGAAACAGATCAACTTAAATTTTTACCAGGCTTAAATGCCGAA
GCCCAAAGATAACTCTAAATCCACGTCACTCCCATCGGCCCCACCATCAG
TCTTCGCTAGCGTAGCCTCTACGGTCTCAACTGACACGCTGTCACCTTCT
CCGCTGTCACGCTGAGTCAGCTCCGGGTCGCAACTCGTGGATTCACCACC
AGAGTTATCCAACAGAGGCTCAACAACCTTGGCATCAGCAGCCCGCTCCG
GCTTCGACCTGGGCTTAGGAGCCGAGCGCTTGAATCTCCTAGACTTGACC
TTATGAAGCTTATCAGAAACTGCAGCCGCCGCAGCGGAGCTCTCATCTTT
AGACACGTGGCGGATATCACCGGCTTGAAGAGCAGACTCAGACGAAAGAG
GAGTGACCGGCTCGCCTCTGAAAACAGCTTCAACAGCGGCTTGGCAGAGG
TGCCAGCGTCCGGACCACATCAGCCCGACGGAACCGTAGATCGGGTTCAC
GATTCGGCCGCAGGCCTCGTAGAGCAGCGATTTGAAAATAGCGGGACGGA
GGTCTTGGGGACCGGCATTG
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