CN191816

Overview
NameCN191816
Unique NameCN191816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  206 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  206 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.233e-13
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  206 PVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.103e-13
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  206 PVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.358e-11
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  206 PVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.728e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  206 PVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.728e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  206 PVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of CN191816 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.770e-11
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = -2
Query:  176 PVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 274
            PVEHPHGGGNHQH+GHA+T +RD P G+KVGLI
Sbjct:  207 PVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLI 239          
The following BLAST results are available for this feature:
BLAST of CN191816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL8_SOLLC4.238e-14100.0060S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL81_ARATH4.238e-14100.0060S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL83_ARATH1.233e-1396.9760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC2.103e-1396.9760S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL8_CAEEL3.358e-1187.8860S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_ANOGA5.728e-1184.8560S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL5.728e-1184.8560S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_DICDI9.770e-1178.7960S ribosomal protein L8 OS=Dictyostelium discoide... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005O05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191816 ID=CN191816; Name=CN191816; organism=Citrus sinensis; type=EST; length=275bp
TAGTAACCTTCCAAAATTGCAAACCAAAATCTAATGCTAACAGATAACAA
CCATATGAAGATGTTCAACAGCACAAAACAAAATTAAAATGAGCTCAAGC
GAAACTCTAAGCCTTGTCAGCCTTTGCAGCAGTGGCAGCTGCTTGTCCTC
TAAGACGACCAGTCCTCCTAGCAGCAATAAGACCAACCTTTTGGCCAGGG
GGTGCATCACGGCGAACCGTACTTGCATGCCCAATGTGCTGGTGGTTACC
ACCACCATGGGGATGCTCAACAGGG
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