CN191799

Overview
NameCN191799
Unique NameCN191799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.234e-61
Identity = 114/132 (86.36%), Postives = 124/132 (93.94%), Query Frame = -2
Query:  376 KLSGNSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGS 771
            KLSGN+P  +ACYDVLVDVPFPIQR+L+ LLANAEKNKEI+ CDEAIC AIRKIHEHRRRRAFFLGFSQSPVEFIN LIESQSKDLK+VAGE SR+AE+ERRSDFFNQPWVEDAVIRYLNR+PAAG+D PGS
Sbjct:  402 KLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  418 TACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRY 744
            TACYD+ V+V  P++ ++S+ L +    +EI   D  I   I  I++ + +R F L FS+ P  ++  L+ SQS+DLK++  + + + E+ERR++F++QPW ++AV RY
Sbjct:  355 TACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  418 TACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRY 744
            TACYD+ V+V  P++ ++S+ L +    +EI   D  I   I  I++ + +R F L FS+ P  ++  L+ SQS+DLK++  + + + E+ERR++F++QPW ++AV RY
Sbjct:  355 TACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759
            N    TACYD+ V+V  P++ ++S  LA+    +EI   D  I   I  I++ + +R F L FS  P +FI   + SQ +DLK++  +   + E+ERR+ F++QPW ++AV R++  K
Sbjct:  323 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759
            N    TACYD+ V+V  P++ ++S  LA+    +EI   D  I   I  I++ + +R F L FS  P +FI   + SQ +DLK++  +   + E+ERR+ F++QPW ++AV R++  K
Sbjct:  323 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759
            N    TACYD+ V+V  P++ ++S  LA+    +EI   D  I   I  I++ + +R F L FS  P +FI   + SQ +DLK++  +   + E+ERR+ F++QPW ++AV R++  K
Sbjct:  323 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 41/118 (34.75%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759
            N    TACYD+ V+V   ++ ++++ L +    +EI   D  I   I  I++ + +R F L F++ P  FIN  ++SQ +DLK +  +   + E+ERR++F+ QPW ++AV RY   K
Sbjct:  382 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 41/118 (34.75%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759
            N    TACYD+ V+V   ++ ++++ L +    +EI   D  I   I  I++ + +R F L F++ P  FIN  ++SQ +DLK +  +   + E+ERR++F+ QPW ++AV RY   K
Sbjct:  382 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = -2
Query:  406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759
            N    TACYD+  +V   ++ ++++ L +    +EI   D  I   I  I++ + +R F L F++ P  FIN  ++SQ +DLK++      S E+ERR++F+ QPW ++AV RY   K
Sbjct:  382 NDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNS-EEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe GN=ssr3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = -2
Query:  412 YDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLN 735
            +D+ ++   P   ++ + LA      +I   D+ +   I+ I   + +  F   FS+SP+EFIN  IESQS+DL++V    + +  ++R +D++ QPWV ++   YLN
Sbjct:  301 FDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408          
The following BLAST results are available for this feature:
BLAST of CN191799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SNF12_ARATH1.234e-6186.36SWI/SNF complex component SNF12 homolog OS=Arabido... [more]
SMRD3_MOUSE5.999e-1637.61SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD3_HUMAN5.999e-1637.61SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_RAT2.977e-1536.44SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_MOUSE2.977e-1536.44SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_HUMAN2.977e-1536.44SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_MOUSE3.292e-1434.75SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_HUMAN3.292e-1434.75SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_BOVIN4.299e-1434.75SWI/SNF-related matrix-associated actin-dependent ... [more]
SSR3_SCHPO6.864e-1231.48SWI/SNF and RSC complexes subunit ssr3 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005N17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191799 ID=CN191799; Name=CN191799; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTTTTTAGCAAGTATACTTGTTGCTGCATAAACACATTG
GATCATGATATGATCCCCCTACGGAGTCCATAGCATTTTAAGTATCTTCC
TTCTGTAAATTAAGAACTGAGTAAAACACAACTACTGTAACAAGCTTGTT
CGTTGAATATGATGAGTAAAACAATGACAACTACCCCTAAACAAAGCTAC
AGAGCAAATTTTTCTGGTTCTACAAGCACATAGCATTCCTTTTGCGGTCA
ACTACAACAGTAATCAAATACAGCTGCCCTACTTACATAAAACAAAACTA
AAATGATCTATAGACACTGACTAAAAGCAATCACACAATGGTCCACCAAC
GGATCTAAAAAACGCTCAACTATGTGCTTCCAGGAGCATCGCTTCCTGCA
GCTGGCTTACGGTTCAAATAACGAATCACAGCATCTTCAACCCATGGTTG
GTTGAAAAAATCTGATCGGCGCTCTTTCTCAGCACTTCGACTACCTTCTC
CAGCCACAAGCTTCAAATCCTTGCTTTGAGACTCAATCAATGTGTTAATA
AATTCCACAGGAGATTGACTGAACCCCAGAAAGAACGCTCTCCTTCTTCG
GTGTTCATGGATCTTCCTTATAGCAAAACATATTGCTTCATCACACTGAT
CAATCTCTTTGTTCTTCTCAGCATTGGCCAATAGAGTAGACAATTCCCTC
TGTATTGGGAATGGCACATCAACCAACACATCATAACATGCTGTTCCAAC
TGGACTATTACCTGAAAGCTTG
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