CN191799
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.234e-61 Identity = 114/132 (86.36%), Postives = 124/132 (93.94%), Query Frame = -2 Query: 376 KLSGNSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGS 771 KLSGN+P +ACYDVLVDVPFPIQR+L+ LLANAEKNKEI+ CDEAIC AIRKIHEHRRRRAFFLGFSQSPVEFIN LIESQSKDLK+VAGE SR+AE+ERRSDFFNQPWVEDAVIRYLNR+PAAG+D PGS Sbjct: 402 KLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16 Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = -2 Query: 418 TACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRY 744 TACYD+ V+V P++ ++S+ L + +EI D I I I++ + +R F L FS+ P ++ L+ SQS+DLK++ + + + E+ERR++F++QPW ++AV RY Sbjct: 355 TACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16 Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = -2 Query: 418 TACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRY 744 TACYD+ V+V P++ ++S+ L + +EI D I I I++ + +R F L FS+ P ++ L+ SQS+DLK++ + + + E+ERR++F++QPW ++AV RY Sbjct: 355 TACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15 Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2 Query: 406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759 N TACYD+ V+V P++ ++S LA+ +EI D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++QPW ++AV R++ K Sbjct: 323 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15 Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2 Query: 406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759 N TACYD+ V+V P++ ++S LA+ +EI D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++QPW ++AV R++ K Sbjct: 323 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15 Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2 Query: 406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759 N TACYD+ V+V P++ ++S LA+ +EI D I I I++ + +R F L FS P +FI + SQ +DLK++ + + E+ERR+ F++QPW ++AV R++ K Sbjct: 323 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14 Identity = 41/118 (34.75%), Postives = 69/118 (58.47%), Query Frame = -2 Query: 406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759 N TACYD+ V+V ++ ++++ L + +EI D I I I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW ++AV RY K Sbjct: 382 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14 Identity = 41/118 (34.75%), Postives = 69/118 (58.47%), Query Frame = -2 Query: 406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759 N TACYD+ V+V ++ ++++ L + +EI D I I I++ + +R F L F++ P FIN ++SQ +DLK + + + E+ERR++F+ QPW ++AV RY K Sbjct: 382 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14 Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = -2 Query: 406 NSPVGTACYDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRK 759 N TACYD+ +V ++ ++++ L + +EI D I I I++ + +R F L F++ P FIN ++SQ +DLK++ S E+ERR++F+ QPW ++AV RY K Sbjct: 382 NDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNS-EEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CN191799 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe GN=ssr3 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12 Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = -2 Query: 412 YDVLVDVPFPIQRELSTLLANAEKNKEIDQCDEAICFAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLN 735 +D+ ++ P ++ + LA +I D+ + I+ I + + F FS+SP+EFIN IESQS+DL++V + + ++R +D++ QPWV ++ YLN Sbjct: 301 FDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408 The following BLAST results are available for this feature:
BLAST of CN191799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN191799 ID=CN191799; Name=CN191799; organism=Citrus sinensis; type=EST; length=772bpback to top |