CN191789

Overview
NameCN191789
Unique NameCN191789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN191789 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 6.671e-46
Identity = 97/153 (63.40%), Postives = 110/153 (71.90%), Query Frame = -1 
Query:  409 RAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXTMLEALQVVGDAHDGHLGENFE-GNNGYAAPYDEGST-SGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNG 861
            RAANVF C YLVNLARPAHR+IP+ HQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQ                      TMLEAL+VVGD+HD  LG+ FE  N+ Y   YD+  T  G+  + KL+EF KSAASFT LD+NYLTPFFTS+NG
Sbjct:  355 RAANVFGCGYLVNLARPAHRKIPMTHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLREFHKSAASFTELDRNYLTPFFTSNNG 507
[Close]
BLAST of CN191789 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.219e-39
Identity = 86/160 (53.75%), Postives = 106/160 (66.25%), Query Frame = -1 
Query:  409 RAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXTMLEALQVVGDAHDGHLGENFEGNNGYAAP---------YDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNG 861
            RA NVF CAYLVNL R  +++IP+KHQ+ALWYSGLRGAMAFALALQS+HDLPEGHGQ                       MLEAL+VVGD  D  + E FE ++    P          ++ S+SG++ KMKLKEF K+  SFTALDKN+LTPFFT+++G
Sbjct:  351 RAVNVFGCAYLVNLFRQENQKIPMKHQKALWYSGLRGAMAFALALQSLHDLPEGHGQIIFTATTTIVVVTVLLIGGSTGKMLEALEVVGDDLDDSMSEGFEESDHQYVPPPFSIGASSDEDTSSSGSRFKMKLKEFHKTTTSFTALDKNFLTPFFTTNSG 510
The following BLAST results are available for this feature:
BLAST of CN191789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX6_ARATH6.671e-4663.40Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH1.219e-3953.75Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005N11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191789 ID=CN191789; Name=CN191789; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTTTGCCACGTGTGATCGAGGGCAGGACTTAAGAATATATTT
GCTAAATCAGGTGTACAGACAAACAGACATCAGTAAGGTAGGACAAGTAA
CTGCCTGATCGCTAATTGTGATTCATCAGTGCCTAATATAAAAAAATCTC
CTTTGTATGACACTTGTATAACTGTATCTTGGCATCTACGAGAGACCGTT
GAAGTTGTAATATAATATGTGCATAACTCTATTTCACCTATCCATCCCTT
TCAGCTTGCGAGCATTACAATCATCTCTAAGCAATTATCTACAAATCTGA
CTTCATCCTGTTTCCTACTTGTTTCTGGTATAACTGTTAATTGGGGCCAT
GGAAACTCAATCTTCTGGAGCTGGGCAGTAGGTCCTCATCCTCTTCATCT
TCTTCATCCCCATTGTGACTTGTAAAGAATGGGGTAAGATAATTCTTATC
TAATGCTGTAAACGATGCAGCACTCTTGCGGAATTCTTTCAGTTTCATCT
TCAACTTATTCCCTGATGTTGAGCCCTCATCATAAGGAGCAGCATAGCCA
TTGTTACCCTCGAAATTTTCGCCTAGGTGGCCATCATGAGCATCACCAAC
AACTTGTAAAGCTTCCAGCATGGTACCAGTTGAACCACCAATCAATAAAA
CTGTCAAAACAACTATGGCAGTAGTTGCAGTGAATATGGTCTGGCCATGT
CCTTCAGGGAGATCATGAACTGATTGCAACGCAAGAGCAAAAGCCATAGC
ACCACGAAGTCCACTGTACCAAAGTGCTTGTTGATGTTTTAAAGGAATCT
GTCGATGTGCAGGTCGAGCCAAATTAACCAAATATGCACAAGAAAAGACA
TTTGCTGCCCT
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