CN191781

Overview
NameCN191781
Unique NameCN191781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN191781 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.459e-40
Identity = 83/96 (86.46%), Postives = 84/96 (87.50%), Query Frame = -2 
Query:  315 CSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 602
            CSNL MNN           KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct:  218 CSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
[Close]
BLAST of CN191781 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.132e-37
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = -2 
Query:  315 CSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 602
            CSNLGM N           KSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct:  217 CSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312
[Close]
BLAST of CN191781 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = -2 
Query:  315 CSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 602
            CS LGMNN           +SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct:  217 CSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312
[Close]
BLAST of CN191781 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 76/96 (79.17%), Postives = 79/96 (82.29%), Query Frame = -2 
Query:  315 CSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 602
            CSNL M+N           KSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct:  217 CSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312
The following BLAST results are available for this feature:
BLAST of CN191781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TF2B_SOYBN8.459e-4086.46Transcription initiation factor IIB OS=Glycine max... [more]
TF2B2_ARATH5.132e-3782.29Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B_ORYSJ1.651e-3577.08Transcription initiation factor IIB OS=Oryza sativ... [more]
TF2B1_ARATH4.803e-3579.17Transcription initiation factor IIB-1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005N05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191781 ID=CN191781; Name=CN191781; organism=Citrus sinensis; type=EST; length=603bp
TTAAACTTTGTTAGGGTAAAACAATGTAAATAAATTAAGCATAAATTGAA
AAATAAACTTGGATTAGCTCCTCTCTGTCTCTCTCCCCCTTCTCTCTGTC
TCTCTCTCTTCACTTTTTTTGACTTTTTGTCAATATTTGTAAATTAAAGG
TTGCAATGCAGTCAACTGCACAAAGACAAAACAGTCAAGAAAATAAGTAC
GAAAATCCTCGTAAATAGGATGCTGACAGATTCTGAATACATCAACGTGA
GGGCAGTTCAAACCACTCAAGATGCTTGTTTCACGGTGTTGTTATTCATG
CGCTCTACATTTTACGGGCTGCAAAGGTTTTTAAGATCCTCTTCCTTGGC
ATACCAGTTTGGTATTATCTTTGAGACATGAGGATAAAGATCCTTGTACG
AATTTCTGATTGTCCCCTCAGCAACTCCAGTAGCAACAGAAATATCTTTG
AGCGGCTTCTTGTCATCTGAAAGCTGAGTTATAATATAAATAACTGCAGC
TGCAATTGATATTGGGCTCCTCCTTATATCAAACTCCTCGGACTTCTGAA
CAGCTTCTTGGGCAGCTTTAACAGCTTGATTATTCATACCCAAATTGGAA
CAG
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