CN191754

Overview
NameCN191754
Unique NameCN191754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 45/62 (72.58%), Postives = 57/62 (91.94%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MKV+AA+LL +LGGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDITELIASGRE+L
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  223 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 561
            MKV+AAYLL VLGGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDITE+IA+GRE+L                                        SD+DMGFSLFD
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERLSSVPSGGGAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MKVVAAYLL VL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MKV AA+LL VLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MKVVAA+LL VL G  SP+  DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 52/113 (46.02%), Postives = 61/113 (53.98%), Query Frame = -1
Query:  223 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 561
            MK VAAYLL VL GN SPSADD+  IL SVG + ++ ++ELLLS++ GKDITELIA+GREK                                         SDDDMGFSLFD
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKF-ASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            M+ VAAYLL VLGGN +PSA DIK ILGSVG D ED RL  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 49/113 (43.36%), Postives = 60/113 (53.10%), Query Frame = -1
Query:  223 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 561
            MK +AAYLL  LGGNTSPSA D+K +L SVG + + +RL+ L+SE++GKDI ELIASG EKL                                        SD+DMGF LFD
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGGAGGAAASGGAAAAGGSAQAEAAPEAAKEEEKEESDEDMGFGLFD 113          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MK +AAYLL  LGGNTSPSA D+K +L SVG D +++RL  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MK +AA+LL  L GN+SPSA+DIK +L SVG D ++ RL  LL E++GKDI ELI+SG EKL
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62          
The following BLAST results are available for this feature:
BLAST of CN191754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RLA2_PARAR3.321e-1972.5860S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE4.337e-1946.9060S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA22_ARATH1.822e-1772.5860S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA24_ARATH4.060e-1770.9760S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA21_ARATH4.060e-1770.9760S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2A_MAIZE4.489e-1646.0260S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA2_BRAFL2.228e-1566.1360S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA2_ALTAL3.800e-1543.3660S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA2_FUSCU5.487e-1462.9060S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2_CLAHE2.085e-1361.2960S acidic ribosomal protein P2 OS=Cladosporium he... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0005M06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191754 ID=CN191754; Name=CN191754; organism=Citrus sinensis; type=EST; length=573bp
GAGGAAATAATAGAAAATGATGGTCGCCAGATATATAAATCTCTGAGCAG
GCATAACAAAGCAGCATATCAATATGGAGCCACAACTTAACACGGTAAAA
GTTTCATCTAAGGATTATATAAACTAAAAACTACAGAACTCCAAAATAAC
AAAACTTTTAAGTCCAGTTAGAAGCTCCCAATTGAGGAGAAAGAGGTGAA
AAAAACGCTGAAGAGCTCTCTAGTCGAAAAGACTGAAACCCATATCATCA
TCAGATTCTTCTTTCTCCTCCACTTTCTCCTCTTTCTTGGCCTCAGCAGC
AGCTGGGGCAGCGCCTGCACCACCGGCAGATGGAGCAGCAGCAACTGCAA
CTCCACCACCAGAAGGCACTGAGGCCAATTTCTCCCGCCCAGATGCAATA
AGCTCAGTTATGTCTTTGCCTTTAACTTCTGATAGAAGGAGCTCAAGCCT
ATTGTCCTCACAATCAGCTCCAACAGAGCCAAGGATTCCCTTAATATCAT
CGGCGGAAGGGCTGGTATTTCCTCCCAAAACAGGCAACAGATATGCTGCC
ACCACCTTCATTTCTTTCTTTCT
back to top