CX301596

Overview
NameCX301596
Unique NameCX301596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX301596_ssr149 microsatellite CX301596_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig485 contig Csv1_Contig485:60..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.675e-45
Identity = 105/192 (54.69%), Postives = 130/192 (67.71%), Query Frame = 2
Query:   38 MDIVFSNSTLLFRQQPLVAPVRTVT-GTHRQQNIIXXXXXXXXXXKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSISVA 610
            MD + S+ST+L R   L  PVR+ +  T      +             LL  S      +  ++S+      +RCG   GI EI ESEF +TVL+S +PVLVEFVA WCGPC+L+ PA+E L+QEYGD+LT+VKIDHDANP+LI E+KVYGLP  ILFK+G+EVP SRREGAITK KLKEYID LL+SISVA
Sbjct:    1 MDSIVSSSTILMRSY-LTPPVRSCSPATSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSV------IRCG---GIKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLLNSISVA 182          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 598
            S G+  IT++EF + VLK+E+PVLV F A+WCGPC+L++P +   A  Y DRL VVK++ D NP  +++YKV G+P L L K G+++ +S  EG I+K KL  ++DT L++
Sbjct:    2 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK-GEQILDS-TEGVISKDKLLSFLDTHLNN 110          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +++  F   VLKS +PVLV+F A WCGPC+++AP +E +A EY DRL V K + D NP    +Y + G+PTL+LFK G+   E+ + GA++K +L  ++D+ L
Sbjct:    2 SDAILYVSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGK--LEATKVGALSKAQLTAFLDSQL 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSI 601
            + EIT++EF        +PVLV F A+WCGPCRL+APA++ +A++YGD+L V+K++ D NP  + + KV G+P L LFKN + V     EGAI K KL E +   LD I
Sbjct:    3 LLEITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELV--MTHEGAIAKPKLLELLKEELDFI 109          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+LFKNG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
The following BLAST results are available for this feature:
BLAST of CX301596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
TRXX_ARATH2.675e-4554.69Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_ANASP2.436e-2247.75Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_THIFE2.694e-2144.04Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO2_SYNY34.595e-2147.71Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_SHIFL2.280e-2042.20Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY2.280e-2042.20Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI2.280e-2042.20Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI2.280e-2042.20Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL62.280e-2042.20Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO572.280e-2042.20Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08011E03SK PhyRootSw1 Citrus sinensis cDNA clone C08011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301596 ID=CX301596; Name=CX301596; organism=Citrus sinensis; type=EST; length=754bp
ATTCGGCACGAGGTAAAAATCTTTAATCACTTGCAAAATGGATATCGTCT
TCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCCTGTT
CGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCGCTAC
AACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGAACGA
ACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAATACGC
GTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTGAGTT
CCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTCGTGG
CCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATGGCTC
GCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATGACGC
AAACCCACAACTAATAGAGGAATACAAAGTTTATGGATTGCCGACCTTGA
TTCTCTTCAAGAATGGACAGGAAGTTCCGGAAAGCAGGAGGGAAGGTGCA
ATTACTAAGTTGAAGCTTAAAGAGTATATTGATACTCTTTTAGATTCAAT
CTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAAATTATGCTCGTTC
TTCAACAGATTTTGACATCATTGGCAAAGACGAATATGGGTAAATATTTA
CTTTTTCCTTATGTAAATCTGTATCATTCGTTACAGTATCCGTGGATGTA
TTCA
back to top