CN191742

Overview
NameCN191742
Unique NameCN191742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:347..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.489e-50
Identity = 91/101 (90.10%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  546 NLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 848
            NLLIGFLSPLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:   74 NLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.791e-49
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = -2
Query:  549 NLLIGFLSPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 848
            NLLIGFLSPLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:   74 NLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.176e-37
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  549 NLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 848
            NL+I FLSP  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:   96 NLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.161e-33
Identity = 66/101 (65.35%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  552 NLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 848
            NL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   77 NLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.161e-33
Identity = 66/101 (65.35%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  552 NLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 848
            NL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   77 NLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.161e-33
Identity = 66/101 (65.35%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  552 NLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 848
            NL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   77 NLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.822e-33
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  552 NLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 848
            NL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   77 NLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.822e-33
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = -2
Query:  552 NLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 848
            NL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   77 NLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.287e-33
Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = -2
Query:  552 NLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 848
            NL I FLSP VDP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S TK   +A   TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   77 NLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CN191742 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = -2
Query:  546 NLLIGFLSPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 848
            NL + FL+P +DP +E  D   GP+LP+K +DEF+PF+RRLPEFKFW+S  KA  IA   TFF  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF +
Sbjct:   71 NLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174          
The following BLAST results are available for this feature:
BLAST of CN191742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1B_ARATH1.489e-5090.10Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1A_ARATH4.791e-4991.09Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1C_ARATH7.176e-3768.00Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_PONAB2.161e-3365.35Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN2.161e-3365.35Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_BOVIN2.161e-3365.35Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT2.822e-3364.36Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE2.822e-3364.36Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_CHICK6.287e-3364.36Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL9.078e-3260.58Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191742 ID=CN191742; Name=CN191742; organism=Citrus sinensis; type=EST; length=849bp
TTTTTTTTTTTTTTTTTCGCACGAACCAAAGTGGCATAAAAGGCTACACT
CACAGAGATCCATTTCCCCATTCAGGTAAGCTAAAAACTGCAATTTCTTG
TCACAAGCATTGTACAATACAAATAGTGTTTCCATGCTATCTTCCAGTAA
ACCATGTGGGATGACAAAGGCTTTTGACAACATTACACTAACCGATAAAC
GAATGAAAAATTTCCCGTAAAATCTTTGTTATAATGGGTCATGCAATTAC
ATTGCCAACAATCTTGGAATCTTCATAACATGAGCGTAAACATTAAAGTT
TCAATTCTGCAACATTTTAGCAATCCCGCACTATTGAACTTTATGTCTAC
TATAAGCTTCATTCACAATAACCAAGTGCATGTCCCTTGAAAGGAAAAAA
TTCAATTATAATATCTTCCCATAACCTATTTTTTTATCCCCATCCAGTCC
TTTTTCTACTGGCTCTGTGAATAAGTTCTGCTTCAGTCCCCACGGGAGCC
ACCGCCACTTGATGAAGGTTTCTTACCACCATACTTCTGTTTTCCAATGT
TGAACGGGATATATCTGTATTTGATCATGTGTGCGATTTGGCGTCTCATT
GTAAGAACAAACAGAACAATCCAGTAACAAAGTAATATAGGCCAAAACAC
AGGAACATCAAACACAGAAAAGAATGTCATTACAAAAGCTATGCAGAAAG
CCTTGGTCATGGAGTACCAAAATTTAAACTCTGGGAGTCGGCGAATAAAA
GGCTTGAATTCATCAGAACCCTTTGTCGGCAACAAAGGCCCATCAGCGAC
TTCGATTTCAGGATCAACCAGAGGCGACAAAAACCCAATAAGCAAATTC
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