CN191736

Overview
NameCN191736
Unique NameCN191736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN191736 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.036e-21
Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = -1 
Query:  444 KSDPSVQTAPVPVQDTLGGNSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHRVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 797
            +SD    +    V      N++ T S  D  +E  SK+   +    +K +  +       +  + E+EDVCPTCLEEY +ENP+I+TKC HHFHL+CI+EWMERS+ CPVC + M F+
Sbjct:  115 RSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSEN----MYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFN 228
The following BLAST results are available for this feature:
BLAST of CN191736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH1.036e-2141.53E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191736 ID=CN191736; Name=CN191736; organism=Citrus sinensis; type=EST; length=809bp
CTTGGTATAAATCATTTTCCTCTTTAGCAAACTTGAAATGTTACATCAAT
ACTAAAATGTTGACCTATGCCCTCAGGATGTATGTATTATTATTGGCAAT
GAAAAATAGAACTCCGAAATGGTGTCACACTATGAATTTGGAACTTTCCC
TATGCGTTTGAAATAGGCTGCGACTCTTTCCTGTACAAAAATTCCCAAAT
TCAGAATCAAGAGCAGAAAGACACTATGTATTTGAAATGGATTGTGACTT
GATAAAATCTAAAGAGAGATTAAATCAAATGGCAGCTGGGCCTGCAGCAG
ACGATGAACTGTGAACCAAAAGAGGGCAAACAAAGAGGAACAACTTCCAA
GCATTTATAAACTTGAACTCCAAAACCCAACGTCAAATAATTAAGAAGCT
GAACTCTGCAGAAATCACTGGACAGCTAATAATCCACAGGAAGGTCAAAT
ATCATTTCCTGATTGCAAACTGGACAGGTGTCACTTCTTTCCATCCATTC
AAAAATGCACGCAAGATGAAAATGATGCTCACATTTTGTGATAATTCTCG
GATTCTCTGCATCATACTCTTCCAGACATGTTGGGCAAACATCCTCCTCC
TCTATCACTGCAACAACACGATGAACAGACTTTGAAAGCTCAACTTCTAG
CTCCTTAGTTGATTCAAGTTCAACATTGGCTACTGTTTTAGATTCTGGTT
CCTTTAGGTCATCACACTTAGATGAAGTTTCTTGAGAATTGCCACCAAGC
GTATCTTGCACAGGAACAGGAGCTGTTTGCACTGAAGGATCACTCTTATT
GCTGCAAAT
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