CN191716

Overview
NameCN191716
Unique NameCN191716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_SOYBN (Coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.100e-74
Identity = 144/226 (63.72%), Postives = 160/226 (70.80%), Query Frame = 2
Query:   77 VSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKXXXXXXXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYIF 754
            VSA S    FR  S+       T T I +  R +   P+  M    +RA VSIEK          FLR  D+ +        VRARFEKMIR+AQD+VC A+E  DGG +FKEDVWSRPGGGGGISRVLQDGA+WEKAGVNVSVVYGVMPP+         +D+KPGP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTD TPAYIF
Sbjct:    8 VSAPSYAFPFRSGSA-----STTPTAISLTKRSWKPPPS--MAKGPVRATVSIEKETPEANRPETFLRGVDEAQSSTS----VRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIF 222          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_ARATH (Coproporphyrinogen-III oxidase, chloroplastic OS=Arabidopsis thaliana GN=CPX PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.823e-73
Identity = 142/224 (63.39%), Postives = 155/224 (69.20%), Query Frame = 2
Query:   83 ASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKXXXXXXXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYIF 754
            AS S TL   P+ ++        Y   P+      P        +R +VSIEK          FLR+SDD          VRARFE MIR AQDSVC AIE  +GG KFKEDVWSRPGGGGGISRVLQDG ++EKAGVNVSVVYGVMPPE         SD+KPGP+PFFAAG+SSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDFTPAYIF
Sbjct:    2 ASHSSTLLSSPT-FAPFSSHRLHYSPNPSTLRFSRPIRNKPNLALRCSVSIEKEVPETERPFTFLRDSDDVTPSSSSSS-VRARFETMIRAAQDSVCDAIEAIEGGPKFKEDVWSRPGGGGGISRVLQDGNVFEKAGVNVSVVYGVMPPEAYRAAKGSASDQKPGPVPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTPAYIF 223          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_TOBAC (Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 143/229 (62.45%), Postives = 156/229 (68.12%), Query Frame = 2
Query:   80 SASSSFT-LFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTT--TIRAAVSIEKXXXXXXXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDE-KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYIF 754
            SAS S+T   + P SW +     T  + +P  F   + T K  T   + +    IEK          FLRESD           VR RFEKM R+AQDSVC AIEK DGG KFKEDVWSRPGGGGG S VLQDGA++EKAGVNVSVVYGVMPPE         +   KPGPIPFFAAG+SSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDFTPAYIF
Sbjct:    8 SASCSWTPTSQFPHSWHSSPSFLTKPLNLP--FTESYKTAKRPTPNYSFKVQAMIEKEVAVSHKPDAFLRESDMGSNVTSNSSSVRGRFEKMRREAQDSVCLAIEKADGGAKFKEDVWSRPGGGGGHSSVLQDGAVFEKAGVNVSVVYGVMPPEAYRAARPTDNGNVKPGPIPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDFTPAYIF 234          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_ORYSJ (Coproporphyrinogen-III oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=CPX PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 7.747e-61
Identity = 119/187 (63.64%), Postives = 131/187 (70.05%), Query Frame = 2
Query:  215 IRAAVSIEKXXXXXXXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGG-KFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDE-------KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYI 751
            +RA+V+IEK          FLRE    +        VR RFE MIR  Q  VC A+E+ DG G +F EDVWSRPGGGGGISRVLQDG ++EKAGVNVSVVYGVMPP+                   K GP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTD TP+YI
Sbjct:   51 VRASVAIEKETPESEPPPTFLRE----DGSGAGSGSVRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVNVSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPSYI 233          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_HORVU (Coproporphyrinogen-III oxidase, chloroplastic OS=Hordeum vulgare GN=CPX PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.498e-51
Identity = 106/181 (58.56%), Postives = 118/181 (65.19%), Query Frame = 2
Query:  227 VSIEKXXXXXXXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGGK-FKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSD-----EKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYI 751
            V+IEK          FLRE    +        VR RFE MIR  Q  +C A+E+ DG GK F EDVWSRPGG    SRVLQDG ++EKAGVNVS V GV P            +      K GP+PFF+AGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPR WWFGGGTD TP+Y+
Sbjct:   51 VAIEKEVPEKEAPTTFLRE----DGSGAGSGSVRERFEGMIRRVQGEICAALEEADGSGKRFVEDVWSRPGGVCVHSRVLQDGNVFEKAGVNVSAVIGVCPRSAYRAAKGAAKNGAADGHKAGPVPFFSAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRSWWFGGGTDLTPSYL 227          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_DROME (Coproporphyrinogen-III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.964e-36
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  323 VRARFEKMIRDAQDSVCQAIEKTDG-GGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDEKPG-PIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYI 751
            +R R E +I + Q   C+A+E  +  G KFK D W RP GGGGI+ VLQDG ++EKAGVN+SVV G +PP           + K G  +PFFA+G+S+V+HP+NP  PT+HFNYRYFE +  K      +QWWFGGGTD TP Y+
Sbjct:   85 MRHRMEILIMEIQAEFCRALEAEENCGQKFKVDRWERPEGGGGITCVLQDGDVFEKAGVNISVVTGSLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRYFEVETAK----GEKQWWFGGGTDLTPYYL 225          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_HUMAN (Coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.281e-35
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 2
Query:  323 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYI 751
            ++ + E +I + Q  VCQA+ + DGG  F  D W R  GGGGIS VLQDG ++EKAGV++SVV+G +  E              K G +PF A G+SSV+HPKNP APT+HFNYRYFE +         +QWWFGGG D TP Y+
Sbjct:  148 MKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGN----KQWWFGGGCDLTPTYL 288          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_RAT (Coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus GN=Cpox PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 70/145 (48.28%), Postives = 90/145 (62.07%), Query Frame = 2
Query:  323 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYI 751
            ++ + E MI + Q  VC+A+ + DG   F  D W R  GGGGI+ VLQDG ++EKAGVN+SVV+G +  E             +K G +PF A GISSV+HPKNP+APT+HFNYRYFE     +       WWFGGG D TP Y+
Sbjct:  137 MKTKMELMIMETQAQVCRALAQVDGVADFSVDRWERKEGGGGITCVLQDGRVFEKAGVNISVVHGNLSEEAANQMRSRGKALKKKDGKLPFTAMGISSVIHPKNPYAPTMHFNYRYFEV----EEADGKMHWWFGGGCDLTPTYL 277          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_MOUSE (Coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus GN=Cpox PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = 2
Query:  323 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAYI 751
            ++ + E MI + Q  VC+A+ + DG   F  D W R  GGGGI+ VLQDG ++EKAGV++SVV+G +  E              K   +PF A G+SSV+HPKNP+APT+HFNYRYFE +           WWFGGG D TP Y+
Sbjct:  137 MKTKMELMIMETQAQVCRALAQVDGVADFTVDRWERKEGGGGITCVLQDGRVFEKAGVSISVVHGNLSEEAANQMRGRGKTLKTKDSKLPFTAMGVSSVIHPKNPYAPTMHFNYRYFEVEEADGN----THWWFGGGCDLTPTYL 277          
BLAST of CN191716 vs. ExPASy Swiss-Prot
Match: HEM6_PROM1 (Coproporphyrinogen-III oxidase, aerobic OS=Prochlorococcus marinus (strain NATL1A) GN=hemF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.175e-30
Identity = 68/142 (47.89%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  326 RARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYG-VMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDFTPAY 748
            RAR +K++ + QD +C  +E  DG GKF E+ W RP GGGG SRVL+DG I+E+ GVN S V+G  +PP                   +FA G S VLHPKNP+ PT+H NYRYFE         A   WWFGGG D TP Y
Sbjct:   16 RARAKKLVLELQDEICAGLETIDGEGKFLEESWERPEGGGGRSRVLKDGKIFEQGGVNFSEVHGNELPPSIISQRPEAKGHS------WFATGTSMVLHPKNPYIPTVHLNYRYFE---------AGPVWWFGGGADLTPFY 142          
The following BLAST results are available for this feature:
BLAST of CN191716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_SOYBN2.100e-7463.72Coproporphyrinogen-III oxidase, chloroplastic OS=G... [more]
HEM6_ARATH8.823e-7363.39Coproporphyrinogen-III oxidase, chloroplastic OS=A... [more]
HEM6_TOBAC2.173e-7162.45Coproporphyrinogen-III oxidase, chloroplastic OS=N... [more]
HEM6_ORYSJ7.747e-6163.64Coproporphyrinogen-III oxidase, chloroplastic OS=O... [more]
HEM6_HORVU2.498e-5158.56Coproporphyrinogen-III oxidase, chloroplastic OS=H... [more]
HEM6_DROME2.964e-3651.03Coproporphyrinogen-III oxidase OS=Drosophila melan... [more]
HEM6_HUMAN4.281e-3548.97Coproporphyrinogen-III oxidase, mitochondrial OS=H... [more]
HEM6_RAT6.181e-3448.28Coproporphyrinogen-III oxidase, mitochondrial OS=R... [more]
HEM6_MOUSE3.392e-3246.21Coproporphyrinogen-III oxidase, mitochondrial OS=M... [more]
HEM6_PROM13.175e-3047.89Coproporphyrinogen-III oxidase, aerobic OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191716 ID=CN191716; Name=CN191716; organism=Citrus sinensis; type=EST; length=754bp
TTTCGCCCAAAAAAAAGCAACTAAAATTCGCTAACATTTTAACCAAATTT
CAATTTCAATGCCGCCCACCACCGCAGTCTCCGCTTCCTCTTCGTTCACT
CTGTTCAGAGTTCCTTCTTCGTGGTCAACCAAGCTTAAACCCACCACCAC
TTACATTCAAATCCCAAATCGTTTCTTCCCAAAACACCCCACTTTCAAGA
TGACCACGACGACAATCCGCGCCGCCGTTTCGATCGAAAAAGAAACCCCA
GAAACAGAGCGGCCCCCTACATTCCTCAGAGAATCAGACGACAAGGAATC
CTCGTCCTCGTCAGCCTCTTCGGTGAGGGCCCGCTTTGAGAAAATGATAA
GGGACGCTCAGGACAGCGTGTGCCAGGCCATTGAGAAAACTGACGGGGGC
GGCAAGTTTAAAGAGGACGTGTGGTCGAGGCCCGGAGGTGGTGGCGGTAT
CAGTAGAGTTCTTCAAGACGGCGCCATTTGGGAAAAGGCTGGCGTTAATG
TTTCTGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCTTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTTACTCCTGCATATAT
CTTT
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