CN191713

Overview
NameCN191713
Unique NameCN191713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_HUMAN (Brix domain-containing protein 2 OS=Homo sapiens GN=BXDC2 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.287e-41
Identity = 86/147 (58.50%), Postives = 104/147 (70.75%), Query Frame = -3
Query:  414 SPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 854
            SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:  133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_BOVIN (Brix domain-containing protein 2 OS=Bos taurus GN=BXDC2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.287e-41
Identity = 86/147 (58.50%), Postives = 104/147 (70.75%), Query Frame = -3
Query:  414 SPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 854
            SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:  133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_XENLA (Brix domain-containing protein 2 OS=Xenopus laevis GN=bxdc2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.744e-41
Identity = 83/149 (55.70%), Postives = 103/149 (69.13%), Query Frame = -3
Query:  408 SPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAL 854
            SP GPS KFLV  +HT+ ELK++GN LK SRP+L+F   F ++  + L+KE++ QIFGTP+ H +S+P+ DH+F FSI D+ IWFRNYQI     E D           LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R +
Sbjct:  126 SPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED---------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_RAT (Brix domain-containing protein 2 OS=Rattus norvegicus GN=Bxdc2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.744e-41
Identity = 86/147 (58.50%), Postives = 102/147 (69.39%), Query Frame = -3
Query:  414 SPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 854
            SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:  132 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 265          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_MOUSE (Brix domain-containing protein 2 OS=Mus musculus GN=Bxdc2 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.744e-41
Identity = 86/147 (58.50%), Postives = 102/147 (69.39%), Query Frame = -3
Query:  414 SPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 854
            SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:  133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_PONAB (Brix domain-containing protein 2 OS=Pongo abelii GN=BXDC2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.386e-41
Identity = 85/147 (57.82%), Postives = 103/147 (70.07%), Query Frame = -3
Query:  414 SPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 854
            SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQI  TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:  133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BRX1_YEAST (Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae GN=BRX1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.127e-37
Identity = 82/186 (44.09%), Postives = 109/186 (58.60%), Query Frame = -3
Query:  303 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA-RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXKTRRKMHELSNPLEPDEFAD 857
            K PNGP++KF +  +HTM+EL  TGN LK SRP+L+F   F    H++LIKE+++  F  P   RKSKP+ DHV  FSIVDD IW R Y+I+  H+  +K     G + ++LVE+GPRF +  I I  GSFGGP +YEN  YVSPN +RA                   RK+    N L  D  ++
Sbjct:  103 KPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_DROME (Brix domain-containing protein 2 homolog OS=Drosophila melanogaster GN=CG11583 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.078e-36
Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = -3
Query:  414 GPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 845
            GPS KFL+  +HTM ELK+TGN L+ SRPLL+F S F +  H KL+KE+ +Q +  P  H KS+P+ DHVF F+ +D  IWFRN+QI            GGL      EVGPR+ +NP+KIF GSF G T++ENP YVSP++ R
Sbjct:  128 GPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSED--------GGLS-----EVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQR 258          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BXDC2_DICDI (Brix domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=bxdc2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.055e-35
Identity = 75/149 (50.34%), Postives = 95/149 (63.76%), Query Frame = -3
Query:  411 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRA 857
            K+P GP+VKF +  VHT++EL++TGN LK SRP L F  +F  + H +LIKE+I QI+ TPK H KSKP+ DHVF F   D  IWFRNYQI+    + D +         L E+GPR  ++  KIF   FGG  LY NP YVSPN  R+
Sbjct:  147 KTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL---------LTEIGPRMIMHIDKIFSDGFGGSVLYSNPNYVSPNNTRS 286          
BLAST of CN191713 vs. ExPASy Swiss-Prot
Match: BRX1_SCHPO (Ribosome biogenesis protein Brix homolog OS=Schizosaccharomyces pombe GN=SPBC800.06 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.166e-34
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = -3
Query:  411 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRA 857
            ++PNGP+VKF V  +HTM+EL +TGN LK SRP+L+F   F    H K++KE++ Q FG PK  R+SKP+ D V   +I D  IWFRNY+I    ++S        D +TL+E+GPRF +  I I  GSFGGP +Y+N  +VS   +RA
Sbjct:  115 RAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSK-------DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRA 256          
The following BLAST results are available for this feature:
BLAST of CN191713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
BXDC2_HUMAN1.287e-4158.50Brix domain-containing protein 2 OS=Homo sapiens G... [more]
BXDC2_BOVIN1.287e-4158.50Brix domain-containing protein 2 OS=Bos taurus GN=... [more]
BXDC2_XENLA3.744e-4155.70Brix domain-containing protein 2 OS=Xenopus laevis... [more]
BXDC2_RAT3.744e-4158.50Brix domain-containing protein 2 OS=Rattus norvegi... [more]
BXDC2_MOUSE3.744e-4158.50Brix domain-containing protein 2 OS=Mus musculus G... [more]
BXDC2_PONAB6.386e-4157.82Brix domain-containing protein 2 OS=Pongo abelii G... [more]
BRX1_YEAST1.127e-3744.09Ribosome biogenesis protein BRX1 OS=Saccharomyces ... [more]
BXDC2_DROME8.078e-3651.39Brix domain-containing protein 2 homolog OS=Drosop... [more]
BXDC2_DICDI1.055e-3550.34Brix domain-containing protein 2 homolog OS=Dictyo... [more]
BRX1_SCHPO1.166e-3447.65Ribosome biogenesis protein Brix homolog OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191713 ID=CN191713; Name=CN191713; organism=Citrus sinensis; type=EST; length=859bp
AGGAATAATCCTTCAGTACTTTTGCTCTTTTCAGAGAAAAATTTCAATCA
TCAATGCTATTCCACTGAACAAGAATAATGAGGCTTAAAAATCAAGATAC
AGATGACGCCACAACAAACATCAATTTCCTAATTCTACTATATAGATGAT
CAACACTGGGATCCGAAAATAGAAAATGGCCTGGAAAGGCAGGAGAGGTC
GTTTATCATTCATAAGATGTCTACAAAAAGGTGGTTCAACTGTATTCTGC
TTGTTGTTTCACCGGAACAGAAAGCATCATGTAAACATCATTCCTTCCAC
ATATCAGCAAATTCATCAGGTTCCAATGGATTGGAAAGCTCGTGCATCTT
TCTCCTTGTCTTAGCTTTAACTTTCTTGGCATACTTCCCGGCCTTATTCT
TCTTCTCCAGAGCTCTAATCTGATTTGGTGATACATAAAATGGATTCTCA
TATAGTGTTGGTCCTCCGAAGCTGCCTCCAAATATCTTAATTGGATTCAA
ACAAAATCTTGGACCAACCTCAACAAGGGTCATTTTGTCCAGACCTCCCC
GAGCCACCTTATCTGATTCATTATGAGGAACTGTAATCTGGTAATTCCTG
AACCATATGTGATCATCAACAATGGAGAAAACAAAAACATGATCATGGTA
AGGCTTAGACTTCCTGTGCTCCTTTGGAGTTCCAAATATCTGAATGATCA
TTTCCTTTATAAGTTTCCAGTGGGCATCTTTACCAAAATTAGACGAGAAT
GTCAGAAGAGGTCGTGACGCTTTTAGATGGTTTCCAGTAAGCTTCAGTTC
TTCCATTGTGTGCACCGCATTTACTAAAAATTTCACAGATGGACCATTGG
GGCTCTTGG
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