CN191707

Overview
NameCN191707
Unique NameCN191707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.025e-78
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            VANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQ KIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT  RGKTVGVSKKR
Sbjct:    4 VANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.541e-64
Identity = 114/149 (76.51%), Postives = 134/149 (89.93%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.742e-63
Identity = 112/146 (76.71%), Postives = 133/146 (91.10%), Query Frame = -2
Query:  238 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 675
            E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTT  RG+TVGV+KK+
Sbjct:    7 EKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.965e-60
Identity = 107/149 (71.81%), Postives = 131/149 (87.92%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.127e-59
Identity = 106/149 (71.14%), Postives = 131/149 (87.92%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.127e-59
Identity = 107/149 (71.81%), Postives = 128/149 (85.91%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR  KIPDWFLNRQKD+K G++SQ+ S+ LD  +RDDLERLKKIR HRGLRHYWGLRVRGQHTKTT   GKTVGV+KK+
Sbjct:    5 VQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 153          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.472e-59
Identity = 106/149 (71.14%), Postives = 130/149 (87.25%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.472e-59
Identity = 106/149 (71.14%), Postives = 130/149 (87.25%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.472e-59
Identity = 106/149 (71.14%), Postives = 130/149 (87.25%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN191707 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.472e-59
Identity = 106/149 (71.14%), Postives = 130/149 (87.25%), Query Frame = -2
Query:  238 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQLKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTNSRGKTVGVSKKR 684
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTT  RG+TVGVSKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CN191707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_ARATH7.025e-7895.3040S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE7.541e-6476.5140S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR3.742e-6376.7140S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE2.965e-6071.8140S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU1.127e-5971.1440S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_CHLRE1.127e-5971.8140S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_RAT1.472e-5971.1440S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG1.472e-5971.1440S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE1.472e-5971.1440S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN1.472e-5971.1440S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191707 ID=CN191707; Name=CN191707; organism=Citrus sinensis; type=EST; length=757bp
TCAAAATTCAATGGAGATACCATTAGGGAGATGAAATATATGTTGCAAAA
CATCTGAATTCTATAAAACCCTCCAGAAATTAATAGATAAAAGACAGACA
GTTCAAATGCTTAAAACCCATCCAAAGAAAATCAAATAAATCTAATATTG
TCTGATGCAAATGTTCAGCAATAGCAAGTCCAAACTCTTCCTGAACATGT
GTATAGATTGTTCAAAACATTGATAAAGGACAGCTCAACGCTTCTTGGAG
ACACCAACAGTCTTTCCACGACTGTTTGTGGTCTTGGTGTGTTGTCCACG
GACACGAAGACCCCAGTAGTGCCTGAGACCACGGTGGTTCCTGATTTTTT
TCAGACGCTCCAAGTCATCTCTCAACTTCATGTCCAGTGCATTGGATACA
ACCTGAGAATACTTTCCATCCTTGTAATCCTTCTGTCTGTTCAAGAACCA
ATCAGGGATTTTTAACTGTCGGGGATTTGCAACAACGACCATGAGATTGT
CAAGTTCAGCAGCAGATAGTTCACCGGCCCTCTTGTTCATGTCAACATCA
GCTTTCTTGCAAACGATGTTAGCCAGTCGCCTTCCAATACCCTTAATTGA
AGTAAGAGCAAACATAATCTTCTGCTTCCCGTCGACGTTAGTGTTCAGCA
CACGCAAAATGTGCTGAAAATCTTCGTTCGCCACCAGAGACATTTTCGAT
TGTGAGGATTGATGATGAAGAGAAGAGAGGCTCTTCGGCGACAGATGAAG
CTGCCCT
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