CN191698

Overview
NameCN191698
Unique NameCN191698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  257 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGS-KADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 802
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++TVLF  FG+  L +      D G           KK D +F+        G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  L
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYAT-TVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCL 279          
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  257 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 802
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  L
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCL 278          
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  257 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 802
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  L
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCL 278          
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.940e-26
Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 2
Query:  275 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQA 799
            S++M    EIGDKTF  AA+LA  + R  V +G   AL +MT+L  ++G AAP L  RKLT  +  VLF  FG+  L +A              + +  +  AN         GA         ++ G     +LK + R  ++  FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A
Sbjct:   53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHA 244          
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.251e-23
Identity = 69/183 (37.70%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  254 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 802
            ++  FT  L +  +SE+GDKTFF A ILAMR+PRR VL G +G L  MTILS ++G     L +R + ++    LF  FG   LWDA               K  A+ +    A K  +  + +LK   R +       I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +
Sbjct:    1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTI 164          
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21
Identity = 68/203 (33.50%), Postives = 103/203 (50.74%), Query Frame = 2
Query:  239 SKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 802
            S  SS ++ F  S++M  LSEIGDKTF  AA++AMRH R LV S    +L +MTILS VVG +A   +S + T     +LF  FG     +      D G         +++       D D     G T      + +    ++  + R   S  FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+
Sbjct:   33 SGSSSHLKSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAI 235          
BLAST of CN191698 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 60/198 (30.30%), Postives = 89/198 (44.95%), Query Frame = 2
Query:  257 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 802
            VQ    S++M +  E+GDK+F   A+LA ++ R  V  G   AL  MT  + +VG AAP L  + +TH +   LF  FG+  L ++               K+      + D K         S       K +          +   S+ FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  L
Sbjct:   24 VQNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHML 221          
The following BLAST results are available for this feature:
BLAST of CN191698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM165_HUMAN1.801e-2638.83Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT3.073e-2637.97Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE3.073e-2637.97Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO8.940e-2636.98UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY39.251e-2337.70UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST2.279e-2133.50UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO2.698e-1430.30UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191698 ID=CN191698; Name=CN191698; organism=Citrus sinensis; type=EST; length=802bp
GGTACTAATATACTAAACATCACTGCTCCTCCTATGTTTTGTCTTCTTGT
TCAATCAGCTTAATTTAAAAAACTCCCAACGAGTCAACTGAGCCGAGTCA
TTAACACCGAACTCAAAACCTCACTGCTCATATTATATATATATAGAGCG
AGAGAGACAGAGAGAGACAGAGAGAGAGTCAGAACTTCTCTGAAGCGCGT
ACAAGCTTATAGTGACTCTCTCTGTTCGTTGAAGCATATCAAAGATGAGC
TCAGTTGTGCAGGGTTTTACCAAGTCGCTTGCCATGACTGTTCTATCTGA
GATCGGCGACAAGACGTTTTTTGCCGCTGCGATCTTGGCAATGCGTCACC
CGCGGAGACTGGTCTTGTCAGGTTGCCTGGGAGCTTTGATTGTGATGACT
ATTCTTTCTGCTGTTGTTGGCTGGGCCGCTCCAAATCTGATCTCTCGTAA
ATTGACTCATCATATAACAACAGTGCTGTTCTTTGGATTTGGTCTATGGT
CTTTATGGGATGCCTTTAGTGATGGAGGGGAGGCTGAAGAATTTGAAGAA
GTTGAAAAAAAGCTGGATGCTGACTTTAAAGCAAATGCAGGAGCAACCAA
AGAGGGCAGCAAGGCTGATGATGAATTAAAAAAGCAAAGGCGGCCATTCC
TCTCACAGTTCTTCTCTCCCATCTTTTTGAAGGCATTTTCAATTACTTTC
TTTGGTGAATGGGGTGACAAGAGCCAGTTAGCTACCATTGGTTTAGCTGC
CGATGAGAACCCATTTGGCGTTGTTCTTGGCGGAATTATAGGACAAGCAT
TG
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