CN191689

Overview
NameCN191689
Unique NameCN191689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.125e-49
Identity = 93/129 (72.09%), Postives = 106/129 (82.17%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M GG  G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFKPP+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E+YRKMV+K Y
Sbjct:   47 LMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLY 175
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.526e-49
Identity = 92/129 (71.32%), Postives = 105/129 (81.40%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M G D G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFK P+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E+YRKMV+K Y
Sbjct:   48 LMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVEKLY 176
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.174e-48
Identity = 83/129 (64.34%), Postives = 108/129 (83.72%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL FP DYP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPLNSYAA+L +N+++Y+K++ K+Y
Sbjct:   18 LMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRY 146
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.287e-45
Identity = 84/129 (65.12%), Postives = 100/129 (77.52%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M  GD G+SAFPE +++F WIGTI+G  GT+YE L YKLSL FP  YP+  P VKF T CFHPNVD +GNICLDIL+DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA L  N+  Y+K + +QY
Sbjct:   42 LMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTAYKKHLHEQY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M+ GD G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   42 LMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.506e-43
Identity = 74/129 (57.36%), Postives = 105/129 (81.40%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            ++  GD G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N+ +Y+K++ ++Y
Sbjct:   42 LLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.506e-43
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M  GD G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   42 LMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.506e-43
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M  GD G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   42 LMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.020e-42
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M  GD G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   42 LMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
[Close]
BLAST of CN191689 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.286e-41
Identity = 77/129 (59.69%), Postives = 98/129 (75.97%), Query Frame = -3 
Query:  291 MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 677
            +M   + G+SAFP+GE+IF W+GTI G + T+Y G +Y+LSL FP  YP+  P VKF T CFHPNVD  G ICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN+ AA + N++++Y+K +   Y
Sbjct:   44 LMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKEYKKYLDAFY 172
The following BLAST results are available for this feature:
BLAST of CN191689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
UBC20_ARATH1.125e-4972.09Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC19_ARATH9.526e-4971.32Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_DICDI6.174e-4864.34Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_XENLA1.287e-4565.12Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MOUSE2.055e-4362.02Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_SPISO3.506e-4357.36Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_MACFA3.506e-4362.02Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN3.506e-4362.02Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_HUMAN1.020e-4261.24Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_DROME4.286e-4159.69Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191689 ID=CN191689; Name=CN191689; organism=Citrus sinensis; type=EST; length=679bp
GAGGGAAAGAAGTCCCTTTCATTTGATTCGAACAAAATTACAACACCATG
TAAACTTTATTTTGCTATTACATGAGAAATTATCAAGAGCCTGAGTAACC
TTCCTTTGGGTATAATGTAAATAACTGTACTGACAATGATGAGACTTATG
TAGATCAGTTTTCATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCC
TTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATC
TGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTC
TGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATA
GCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAATAAACTTTGAATGG
ACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCACTTGTCCTGAAGG
ATGTCTAGGCATATGTTGCCATACTGATCAACATTTGGATGGAAGCACAT
AGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAAT
GCAAAGAAAGTTTGTATGATAAACCCTCATACATAGTTCCCTTTCCACCC
TCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCCGA
GACCCCAAGATCACCTCCACTCATCATAA
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