CN191687

Overview
NameCN191687
Unique NameCN191687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.733e-31
Identity = 74/123 (60.16%), Postives = 86/123 (69.92%), Query Frame = 2
Query:  158 MAVLTKNTATRLPLLL-SQRAAC---LHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            MA++T+NTATRLPL+L S RAA    LHT++P                              G+SKTAEFVISK+DD++N+ RRGSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPR
Sbjct:    1 MAMITRNTATRLPLVLQSHRAAAVSHLHTSLPALSPATTPTSYTRPGPPSTSAPPP------GLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 117          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.502e-30
Identity = 73/126 (57.94%), Postives = 84/126 (66.67%), Query Frame = 2
Query:  158 MAVLTKNTATRLPLLL-SQRAAC------LHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            MA++T+NTATRLPLLL SQRA        LHT++P                              G+SK AEFVISK+DD++N+ R GSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPR
Sbjct:    1 MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPP------GLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 120          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.421e-25
Identity = 59/102 (57.84%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  209 QRAACLHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            QRAA +HTT+P                              GISK AE+VISK+DD++N+ RRGSIWPM+FGLACCAVEMMH GAARYD DRFGIIFRPSPR
Sbjct:   19 QRAATIHTTLPSLSQQPASSPATSGGAQPPSMNTP-----AGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPR 115          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.626e-21
Identity = 42/55 (76.36%), Postives = 53/55 (96.36%), Query Frame = 2
Query:  350 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            EF++SK+D++VN+ R+GS+WPM+FGLACCAVEMMH+ A+RYDLDRFGIIFRPSPR
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPR 84          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NUOB_METFK (NADH-quinone oxidoreductase subunit B OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.054e-20
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  353 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            FV + LD V+NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPR
Sbjct:   11 FVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPR 64          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 115          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 115          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 2
Query:  347 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            AE+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   71 AEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 126          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 115          
BLAST of CN191687 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  338 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 514
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPR
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPR 115          
The following BLAST results are available for this feature:
BLAST of CN191687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
NDUS7_BRAOL1.733e-3160.16NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH2.502e-3057.94NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_SOLTU1.421e-2557.84NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM1.626e-2176.36NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NUOB_METFK1.054e-2079.63NADH-quinone oxidoreductase subunit B OS=Methyloba... [more]
NDUS7_PONPY8.920e-2067.80NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR8.920e-2067.80NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_MOUSE8.920e-2069.64NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN8.920e-2067.80NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO8.920e-2067.80NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191687 ID=CN191687; Name=CN191687; organism=Citrus sinensis; type=EST; length=515bp
GCTAAATCCCAATACTACCGGAGAGAGTAACCACCACTTTCAAACCCCAA
CAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAACCA
AACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAA
AAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCC
TCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCG
CCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGG
AATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGC
TCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGAT
GCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCA
GGCCCAGCCCTCGCC
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