CN191685

Overview
NameCN191685
Unique NameCN191685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191685 vs. ExPASy Swiss-Prot
Match: CEFD_STRCL (Isopenicillin N epimerase OS=Streptomyces clavuligerus GN=cefD PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 61/245 (24.90%), Postives = 103/245 (42.04%), Query Frame = 3
Query:  105 IARINNGSFGCCPKSVISAQQKWQLEFLKQPDDFYFNRLKDEILKSRLVIRDLVNADHVDEISIVDNATTATAIVLQSVAWEFLQGKFNKGDAVVMLQYAYGAVKKSLEAYVTRAGGYVIEAWFLFPVNSDGEIVSEFRKALERGKANGRKVRLAMIDHVTSIPSVPIPVKELIKICREEGVDKVFVDGAQGIGCVDVDMKEIGADFYTGTLNKWVFCPPGAAFLYCRKSNEIDDLHHPVVSHEY 839
            +  +N GS G  P+S       ++     +P DF    +   + ++R  +  L+  D +  +++  N T A  +V  S+  E         D    +++ +  V         R  G  +  + L  + SD   ++    A     A G + RL    HV S   + +P  EL +  R  G+  V VDGA   G +D+D+  I  DFY G+ +KW+  P G  FL+      +++L    VS  Y
Sbjct:   19 VVNLNTGSGGPLPRSAFERVTGFRAHLAAEPMDFLLREVPALLWQARESLARLIGGDPL-RLALATNVTAAVNLVASSLRLEAPGEILLSDDEYTPMRWCWERV--------ARRHGLELRTFRLPELPSDPAEITAAAVA-----AMGPRTRLFFFSHVVSTTGLILPAAELCEEARARGITTV-VDGAHAPGFLDLDLSRIPCDFYAGSGHKWLLAPTGVGFLHL-APGRLEELEPTQVSWAY 247          
BLAST of CN191685 vs. ExPASy Swiss-Prot
Match: CEFD_NOCLA (Isopenicillin N epimerase OS=Nocardia lactamdurans GN=cefD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 61/228 (26.75%), Postives = 97/228 (42.54%), Query Frame = 3
Query:  105 IARINNGSFGCCPKSVISAQQKWQLEFLKQPDDFYFNRLKDEILKSRLVIRDLVNADHVDEISIVDNATTATAIVLQSVAWEFLQGKFNKGDAVVMLQYAYGAVKKSLEAYVTRAGGYVIEAWFL--FPVNSDGEIVSEFRKALERGKANGRKVRLAMIDHVTSIPSVPIPVKELIKICREEGVDKVFVDGAQGIGCVDVDMKEIGADFYTGTLNKWVFCPPGAAFLY 782
            +  +N GS G  P+ V   +   +      P DF   +L   +  +R  +   + A   + ++   N T A  +V  SV     Q     G  +++    Y  ++   E  V R  G V+  + L   P+ S  E+V     A+      G + RL    HV S   + +P   L +  R  GV  V VDGAQ  G  D+D+  +  D+Y G+ +KW+  P G  FL+
Sbjct:   19 VTNLNAGSCGPLPRPVFD-RVTVRARMAAGPMDFLSRQLPPLLWTARERLAGYLGA-RPERLAFATNVTGAVNLVASSV-----QPHLAAGGEILLSDQEYAPMRWCWER-VARHQGLVVRTFRLPVQPLGSPDEVVEAATAAM------GPRTRLLFFSHVVSSTGLVLPATRLCEEARRRGVLTV-VDGAQAPGFTDLDLAALPCDYYAGSGHKWLLAPTGVGFLH 231          
The following BLAST results are available for this feature:
BLAST of CN191685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CEFD_STRCL3.302e-1324.90Isopenicillin N epimerase OS=Streptomyces clavulig... [more]
CEFD_NOCLA1.812e-1126.75Isopenicillin N epimerase OS=Nocardia lactamdurans... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0005K05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191685 ID=CN191685; Name=CN191685; organism=Citrus sinensis; type=EST; length=857bp
TACTAAAATATCCAATACCTACTATGCCTGAAAAGCCTGAACTTTCACCA
ACTTTGATTTCAGACACTGAACTCCTATCTGAATTCTCACACCATGTCCA
AAACATAGCTAGAATCAATAATGGAAGCTTTGGTTGTTGCCCGAAGAGTG
TTATATCAGCACAGCAGAAGTGGCAACTTGAGTTCCTCAAACAACCTGAT
GACTTTTACTTCAATCGGCTGAAAGATGAGATTTTGAAATCCAGACTCGT
GATCAGAGACTTGGTCAATGCTGACCATGTTGATGAAATATCAATTGTTG
ATAATGCCACCACTGCTACAGCCATTGTGTTGCAGAGTGTTGCTTGGGAA
TTTTTGCAAGGGAAGTTTAACAAAGGTGATGCTGTTGTCATGCTTCAATA
TGCTTATGGTGCTGTGAAAAAATCTCTGGAAGCATATGTTACGCGTGCAG
GTGGGTATGTTATTGAAGCTTGGTTTCTATTTCCTGTTAATTCTGATGGT
GAGATTGTCAGTGAGTTTCGGAAAGCTTTAGAAAGAGGGAAAGCCAATGG
TAGGAAAGTCAGATTGGCTATGATTGATCATGTGACGTCTATTCCTAGTG
TTCCGATTCCGGTTAAAGAATTGATCAAGATTTGTCGGGAAGAGGGTGTC
GATAAAGTATTTGTTGATGGTGCACAGGGGATTGGGTGTGTTGATGTTGA
CATGAAAGAAATTGGGGCTGATTTTTACACTGGTACTTTGAACAAGTGGG
TTTTTTGCCCGCCTGGGGCAGCGTTTTTGTATTGTAGGAAATCAAATGAA
ATTGATGATTTGCATCACCCTGTGGTGTCTCATGAGTATGGAAATGGGTT
GGCTATC
back to top