CN191684

Overview
NameCN191684
Unique NameCN191684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191684 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.170e-45
Identity = 84/118 (71.19%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    7 TNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIP 360
            T+KEVRK+VY+CPEK+CVHH  SRALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+A+   +S  N  AAA  P
Sbjct:   98 TSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAP 215          
BLAST of CN191684 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.448e-45
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 1
Query:    7 TNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAA 354
            T+KEVRK+VY+CPEKSCVHH P+RALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+AR    S     AA A
Sbjct:  102 TSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATA 217          
BLAST of CN191684 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.188e-43
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 1
Query:   19 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNP 339
            ++KKVYICP K+CVHHD SRALGDLTGIKKH+SRKHG            YAVQSDWKAH+K CGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR +++S+ NP
Sbjct:  119 IKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNP 225          
The following BLAST results are available for this feature:
BLAST of CN191684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUC_ARATH1.170e-4571.19Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
MGP_ARATH4.448e-4572.41Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
JKD_ARATH3.188e-4372.90Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005K04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191684 ID=CN191684; Name=CN191684; organism=Citrus sinensis; type=EST; length=563bp
GAGGGAACAAACAAAGAAGTAAGAAAGAAGGTGTATATTTGCCCAGAAAA
AAGCTGCGTGCATCATGATCCATCAAGAGCCCTAGGCGACCTCACTGGAA
TAAAGAAGCACTTCAGCAGAAAACATGGGGAAAAGAAATGGAAGTGTGAG
AAATGCTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATAGTAA
GATTTGCGGCACTCGAGAGTATAGATGCGACTGTGGCACTCTCTTTTCCA
GGAAGGACAGTTTTATCACACACAGGGCCTTTTGTGACGCTTTAGCTGAA
GAAAGTGCAAGGTTCACTACAATTTCATCCACAAACCCTCAAGCTGCCGC
TGCAATCCCCCAATTTTCCTCAGTCTTTAGGCAGCAGCAACAATCGGCTC
CTGGATCGGAGCTTGCAGGTAATAATGTTATTGCAGATGGGCAGAAGCCG
AGACTACCGCTGTGGCTAGACCAAGCCAATAATTCAAATGCCATGTTAAC
ACCAATTGGCTCATCGTCAACAGGCTTGCCTGAATTGTCACAAATGGTGG
CACCAATGAATAT
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