CN191674

Overview
NameCN191674
Unique NameCN191674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = -2
Query:  174 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK----TAAVVSQESGDAKTSKKVE 740
            WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES      A   S+E  +A  SK +E
Sbjct:  175 WYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.627e-49
Identity = 106/201 (52.74%), Postives = 136/201 (67.66%), Query Frame = -2
Query:  174 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK-----TAAVVSQESGDAKTSKKVE 740
            WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES            +ES +A  SK++E
Sbjct:  175 WYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAETESKEESTEASASKRLE 374          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: IMP2_CAEEL (Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.292e-38
Identity = 95/209 (45.45%), Postives = 121/209 (57.89%), Query Frame = -2
Query:  231 EMXFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTR------DTARPFSMLGLGDIVIPGIFVALALRFD-----------VSRG--KGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK 800
            ++ F R  IIA +  +     +  ++HW+ NN +G++F I GIE L L SFK G++LL GLF YDIFWVF T VM SVAK  DAPI L FP          A   SMLGLGDIVIPGIF+AL  RFD             +G  KG  YF    + Y  GL +T+ VM+ F+AAQPALLY+VP  +       +  GE+  L  +DES+
Sbjct:  242 KIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVGLFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALWNYDESR 450          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: YL8H_SCHPO (Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe GN=SPAC25B8.17 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.026e-32
Identity = 78/199 (39.20%), Postives = 108/199 (54.27%), Query Frame = -2
Query:  243 YFRSLEMXFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDV--------SRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEF 815
            + RS     T  +I A +       +Y   KHW+A+N L  A     I ++ + S+ TGA+LL  LF YDI++VF T VMV+VA   D P K + P        SMLGLGDIV+PG+ +AL  RFD+           K S YF++ F+ Y +GL +T   + +F+AAQPALLY+ PA I        +  E+K L  F
Sbjct:   80 FVRSFNPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVTVATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSF 278          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: YKK0_YEAST (Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae GN=YKL100C PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.093e-27
Identity = 72/205 (35.12%), Postives = 112/205 (54.63%), Query Frame = -2
Query:  204 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTR-DTAR---PFSMLGLGDIVIPGIFVALALRFDVSR---------------GKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQL-------LEFDESKTAAVVSQES 740
            +Y S   WL +N + +   I  I  L L + K+GA++L  LF YDI +VF T VMV+VA + D P+KL  P + +TA+    FS+LGLGDI +PG+F+A+  ++D+ +                   +YF +A + Y   LV  ++ ++ F  AQPALLYIVP+++        WN + KQ        +E D+S   A+  +E+
Sbjct:  322 FYLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATNLDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVACWNKDFKQFWNFQYDTIEVDKSLKKAIEKKEN 526          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: PSL1_MOUSE (Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.090e-24
Identity = 71/213 (33.33%), Postives = 105/213 (49.30%), Query Frame = -2
Query:  261 HFPYFRSLEMXFTRSQIIAAIPGTFFCAW----YASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKSFD-------APIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 824
            + PYF        R  ++A    T    W       Q  W+  +TLG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP        +MV VA            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   Q  QPALLY+VP  +       +W  E+
Sbjct:  278 NLPYFHKRPQ--ARMLLLALFCVTVSVVWGIFRNEDQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRREL 488          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: PSL1_HUMAN (Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = -2
Query:  261 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKSFD-------APIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 719
            W+  + LG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP        +MV VA            P+ L  P  +++      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y VGL++T + +   Q  QPALLY+VP  +    A  +W  E+
Sbjct:  322 WVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRREL 495          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: PSL1_RAT (Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-23
Identity = 71/213 (33.33%), Postives = 104/213 (48.83%), Query Frame = -2
Query:  261 HFPYFRSLEMXFTRSQIIAAIPGTFFCAWYA----SQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKSFD-------APIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 824
            + PYF        R  ++A    T    W       Q  W+  +TLG+AFC+  +  + L +FK   +LL  LFVYDIF+VF TP        +MV VA            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   +  QPALLY+VP  +       +W  E+
Sbjct:  278 NLPYFHKRPQ--ARMLLLALFCVTVSVVWGVFRNEDQWAWVLQDTLGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFFVFITPYLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMRHGQPALLYLVPCTLLTSCTVALWRREM 488          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: PSL1_CHICK (Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = -2
Query:  261 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSF---------------DAPIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 719
            W+  + LG+AFC+  ++ + L +FK   +LL  LFVYD+F+VF TP +    +S                  P+ L  P  +++      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   Q  QPALLY+VP  +    +  +W  E+
Sbjct:  318 WVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGESIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGIGLLVTFVALALMQMGQPALLYLVPCTLITSFSVALWRKEL 491          
BLAST of CN191674 vs. ExPASy Swiss-Prot
Match: PSL2_HUMAN (Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = -2
Query:  300 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKS-----------FDAPIKLLFPTRDTA-RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 719
            W+  + LG+AFC+  I+ L L +FK+  ILL  L +YD+F+VF TP        +MV +A                P  + F        P S+LG GDI++PG+ +A   RFDV  G    Y+ S+ + Y +G++LT +V+   +  QPALLY+VP  +
Sbjct:  314 WILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGESIMVELAAGPFGNNEKLPVVIRVPKLIYFSVMSVCLMPVSILGFGDIIVPGLLIAYCRRFDVQTGSSYIYYVSSTVAYAIGMILTFVVLVLMKKGQPALLYLVPCTL 473          
The following BLAST results are available for this feature:
BLAST of CN191674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HM13_HUMAN7.303e-5052.50Minor histocompatibility antigen H13 OS=Homo sapie... [more]
HM13_MOUSE1.627e-4952.74Minor histocompatibility antigen H13 OS=Mus muscul... [more]
IMP2_CAEEL1.292e-3845.45Intramembrane protease 2 OS=Caenorhabditis elegans... [more]
YL8H_SCHPO4.026e-3239.20Probable intramembrane protease C25B8.17 OS=Schizo... [more]
YKK0_YEAST5.093e-2735.12Probable intramembrane protease YKL100C OS=Sacchar... [more]
PSL1_MOUSE3.090e-2433.33Signal peptide peptidase-like 2B OS=Mus musculus G... [more]
PSL1_HUMAN8.990e-2436.21Signal peptide peptidase-like 2B OS=Homo sapiens G... [more]
PSL1_RAT1.174e-2333.33Signal peptide peptidase-like 2B OS=Rattus norvegi... [more]
PSL1_CHICK4.462e-2333.33Signal peptide peptidase-like 2B OS=Gallus gallus ... [more]
PSL2_HUMAN4.933e-2235.63Signal peptide peptidase-like 2A OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005J22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191674 ID=CN191674; Name=CN191674; organism=Citrus sinensis; type=EST; length=843bp
CACTTATAAGAAGGCTAAAATATTANTTTCTTGCTTAATGCCAAAATCTT
TTACAATTGTTTGCAGGTTGCATAAGTTAGCTTGAATTGAGCTTGCACAG
CGTTGATCCTCAAAAGGAGAAATAAAAGATATTTCTTGCTAAAATGGTCC
ATTGTAGATGGCATTTTAAATTATTCGACTTTCTTGCTAGTTTTGGCATC
GCCACTTTCTTGTGATACAACCGCGGCAGTCTTAGACTCATCAAACTCCA
ACAACTGTTTGACTTCGCCGTTCCATATGCAGTGAGCGGCCAAGAATCCA
ATTACAGCAGGCACAATATACAAAAGTGCAGGCTGTGCAGCCTGAAACCA
GTTCATGACAATGATTGTTAGGACTAAACCAACTGTATATCCCAGAAAAG
CGCTCTTGAAGTATCGGCTTCCTTTCCCTCTGGACACATCAAATCGCAAT
GCTAGTGCCACAAAGATACCAGGAATTACAATGTCGCCAAGTCCAAGCAT
GGAAAATGGTCGGGCAGTGTCTCTCGTTGGGAACAAAAGCTTGATAGGAG
CGTCAAAAGATTTTGCAACACTAACCATTACTGGAGTGAAGAAAACCCAG
AAAATATCATATACAAAAAGTCCAGCCAAAAGAATGGCACCAGTCTTGAA
AGATCCAAGAGAAAGCATTTCAATTCCCTGAATGCAGAAGGCAAGGCCCA
AGGTATTGTTAGCTAGCCAATGTTTCTGTGAAGCATACCATGCACAAAAA
AACGTCCCAGGGATTGCAGCAATGATCTGAGACCTTGTGAACTNCATCTC
CAAAGAACGGAAATAAGGGAAATGCCATATAATTAGGTCCTCA
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