CN191671

Overview
NameCN191671
Unique NameCN191671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.489e-46
Identity = 93/117 (79.49%), Postives = 97/117 (82.91%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPP             DRRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDLITRDYLERDK NPNMFRYLA
Sbjct:  622 KEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.181e-17
Identity = 56/121 (46.28%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            K P  K +   D F FN +F  K+ RIKI                     DR+Y IDA+IVRIMK RK LGH  LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct:  641 KSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 55/121 (45.45%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            K P  K +   D F FN+ F  K+ RIKI                     DR+Y IDA+IVRIMK RK LGH  LV E   QL    KP    +KKRIE LI RDY+ERDK +PN + Y+A
Sbjct:  641 KSPKGKEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 55/121 (45.45%), Postives = 62/121 (51.24%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            K P  K I   D F  N  F  K+ RIKI                     DR+Y IDA+IVRIMK RK L H  LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct:  777 KNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  420 TKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758
            +K+I  +D F FN+KF  K+ R+K+                     DR++ I+ASIVRIMK+RK L H  LV E ++QL   F P+   +KKRIE LI R+YLER K +  ++ Y+A
Sbjct:  653 SKSIDESDVFAFNTKFKSKLFRVKVMAVVQKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIP------LPPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            K+P  + ++  D F FN  F   + RIKI       +                R++  DA IVR+MK RKV  H QL+ E   QL   F P    IK+RIE LI R+YL+R   N  ++ YLA
Sbjct:  663 KDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.634e-13
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  420 TKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758
            TK I  TD F FNSKF+ K+ +IK+                     DR+Y +DA+IVRIMK+RK L H  L+ E V  L   F+P    +KKRIE LI ++YL RD  N  ++ Y+A
Sbjct:  688 TKVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVEENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSLL--KFQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            KEP +K I     F  N +FT K+ R+KI                       DR++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  646 KEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            KEP +K I     F  N +FT K+ R+KI                       DR++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  646 KEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN191671 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  420 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 770
            KEP +K I     F  N +FT K+ R+KI                       DR++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  646 KEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
The following BLAST results are available for this feature:
BLAST of CN191671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CUL1_ARATH9.489e-4679.49Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4A_HUMAN3.181e-1746.28Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE1.579e-1645.45Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL4B_HUMAN1.336e-1545.45Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL3_DICDI1.336e-1541.03Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_SCHPO7.333e-1436.59Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4_DICDI1.634e-1341.88Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL3_XENTR2.134e-1339.02Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA2.134e-1339.02Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA2.134e-1339.02Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005J20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191671 ID=CN191671; Name=CN191671; organism=Citrus sinensis; type=EST; length=773bp
CAGGCAATCCTCTTATAAACTTACAATCAAAACACAACTTGTGATAGATT
TAAGATACATATTTTCTTCGGCAAAAGAAATTATAAAAGAAAAAGAAAGA
GAAATCACAAACAAACATCAAGTCACGAAATGGGATTGCAGAAATAAGAA
GACAGAACAGCATTGTCTCTCGGTGCACTGAACCACATTAAGGAATGAAT
AACTATTTCTCCAACATGGGTTCGAAATCTATACCTGCTCCTCACACCTG
GCCCAACAGCAAAATGTACAAGCATCGCAGCTCTGCTTCTGAGCAATCAC
CAGACAAGGCACTCCTGGCGGCGGTTTACATATGTTTGTCCCAGTTCCAC
CATGAACTAACCCTCTTTGTGGGCAGCAAATGTCACCACTTCATCTGGAT
TACCAACCACTCTAGATCACGCCAAGTACCTGAACATATTGGGATTAGAT
TTGTCCCTCTCGAGATAGTCTCGAGTGATAAGATCTTCAATCCTCTTTTT
GATTGCCTTGAAATCAGGCTTGAACATGCGGCCCAACTGCTCGACACACT
CCAATACCAATTGTTGGTGCCCCAAAACTTTCCGACTTTTCATAATGCGC
ACAATTGAGGCATCAATGGCATATCGTCTGTCCTTATCAACATCTTCAAT
AACCTTCTTTTTCTCATCCACAGGAGGGAGAGGAATCTTGATTCTCCTCA
TTTTGTCGGTAAACTTGGAATTGAACTCAAAGTGATCAGTAGGAGAGATG
GTTTTTGTATTTGGCTCTTTGTT
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