CN191669

Overview
NameCN191669
Unique NameCN191669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN191669 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.446e-82
Identity = 143/165 (86.67%), Postives = 154/165 (93.33%), Query Frame = 3 
Query:  123 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQID 617
            ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYTTIYNMCTQKPPHDYSQQLYDKYRE+FEEYI+STVLP++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIARRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQID
Sbjct:    2 ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQID 166
[Close]
BLAST of CN191669 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 41/156 (26.28%), Postives = 81/156 (51.92%), Query Frame = 3 
Query:  156 EFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQID 617
            +F ++    LK  +  + +   S+  +  LY   YNM  QK    +   LY+  ++  ++++ + V  ++ E  DE  L EL   W NHK  +  +     Y+DR ++ + +L  + ++GL  FRD V   + +  ++ + +++++ +EREGE ID
Sbjct:   24 DFPKRTWKLLKTAMRQIHQQNASNLSFEELYRNGYNMVLQK----HGDLLYNNLKKMVDKHLKA-VAKTVSESIDEKFLLELNSSWINHKTSMLMIRDILMYMDRNYVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVID 174
The following BLAST results are available for this feature:
BLAST of CN191669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CUL1_ARATH2.446e-8286.67Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL3_DICDI6.573e-1126.28Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0005J18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191669 ID=CN191669; Name=CN191669; organism=Citrus sinensis; type=EST; length=619bp
GAGGGTAAAATTACCTCTGAGCACCTGAGCGATTCATTCTTTCTGGTCCC
GATTTCGCTTCGAATCAGATTTTAGGGGTTTTTGGGAATTGAGAAGAGGG
GTTTGGCGATATGACGATGAACGAGCGGAAAACGATTGACTTAGAACAAG
GATGGGAGTTTATGCAGAAGGGAATTACAAAGTTGAAGAATATACTGGAA
GGGCTCCCCGAGCCACAATTCAGCTCTGAAGATTACATGATGCTTTACAC
AACCATCTACAACATGTGCACGCAAAAGCCTCCCCATGATTACTCTCAAC
AGCTTTATGACAAGTACCGGGAGTCTTTTGAAGAATACATATCTTCCACG
GTATTGCCATCTATAAGAGAGAAGCATGATGAATTTATGTTGAGGGAGCT
TGTAAAAAGATGGTCAAACCATAAGGTTATGGTCAGGTGGCTTTCTCGAT
TCTTTCATTATCTTGATCGGTACTTTATAGCCCGGAGGTCACTGCCACCC
CTTAATGAAGTTGGCCTTACCTGTTTCCGTGATCTGGTGTACACGGAATT
AAATGGAAAAGTAAGAGATGCTGTAATTACTTTGATTGATCAAGAGCGTG
AGGGCGAGCAGATCGATCG
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