CX301561

Overview
NameCX301561
Unique NameCX301561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11474 contig Csv1_Contig11474:458..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.468e-59
Identity = 109/178 (61.24%), Postives = 137/178 (76.97%), Query Frame = 3
Query:   27 FGTRVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 557
            F     C++PKAC++LLRGASKD+LNE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG+++WP++A A A E IPRTLAQNCG +V+R MT L+ KHAN  E  + GIDGNTG I DM+E  +WD  +VK QT KT+IEA CMLLRIDDIVSGIKK +  G+GQ
Sbjct:  362 FSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGGAGQ 539          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.349e-55
Identity = 101/176 (57.39%), Postives = 137/176 (77.84%), Query Frame = 3
Query:   27 FGTRVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 554
            F    +C++P+AC+++LRGASKD+LNE+ERNL D ++VA+NI  NPKLVPGGGA E+ VS+ L++ SSSIEG+ + P+ A A A EAIP+TLAQNCGV+V+R +T L+ KH    N +IGI+GN+G I+DM E  +W+   VK Q +KTAIE+ACMLLRIDD+VSG+KK++    G
Sbjct:  363 FTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLKKQKVAKGG 538          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.680e-55
Identity = 101/163 (61.96%), Postives = 129/163 (79.14%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 533
            CK+PKACT+LLRG SKD++NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG+ +WPY A A A E IPRTL QNCG N I+ +T L+ KHA G++++ GIDG TG + DM E  +W+   VK Q+ KTAIE+AC+LLR+DDIVSG++K
Sbjct:  364 CKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSF-GIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.399e-53
Identity = 103/185 (55.68%), Postives = 134/185 (72.43%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 593
            DCKDPKACT++LRGASK++L EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH   G   W G+DG  G ++DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK      Q  + P+   +A+
Sbjct:  364 DCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTW-GVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHKKKGEDHGRQPAAAPEAPQQAE 547          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 103/180 (57.22%), Postives = 131/180 (72.78%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 557
            DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  365 DCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 103/180 (57.22%), Postives = 131/180 (72.78%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 557
            DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  365 DCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 103/180 (57.22%), Postives = 131/180 (72.78%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 557
            DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  365 DCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 103/180 (57.22%), Postives = 131/180 (72.78%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 557
            DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  365 DCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.944e-53
Identity = 102/180 (56.67%), Postives = 131/180 (72.78%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 557
            +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  365 ECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.020e-52
Identity = 101/180 (56.11%), Postives = 131/180 (72.78%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 557
            +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + D+KE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  365 ECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
The following BLAST results are available for this feature:
BLAST of CX301561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TCPG_OXYGR8.468e-5961.24T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_TETPY4.349e-5557.39T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_SCHPO5.680e-5561.96T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_XENLA1.399e-5355.68T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_RAT2.387e-5357.22T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB2.387e-5357.22T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_MOUSE2.387e-5357.22T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_HUMAN2.387e-5357.22T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN6.944e-5356.67T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_MACFA2.020e-5256.11T-complex protein 1 subunit gamma OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC08011B03SK PhyRootSw1 Citrus sinensis cDNA clone C08011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301561 ID=CX301561; Name=CX301561; organism=Citrus sinensis; type=EST; length=708bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGTTGATTGCAAA
GATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCT
GAATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACA
TAATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACA
GTGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAA
GTGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTT
TGGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAA
GGAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACAC
TGGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATG
TGAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTG
AGGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTC
AGGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATA
GTGAGCANATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAG
TTTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATG
ATTTTGCT
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