CX301254

Overview
NameCX301254
Unique NameCX301254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301254 vs. ExPASy Swiss-Prot
Match: PDC2_PEA (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pisum sativum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 54/150 (36.00%), Postives = 64/150 (42.67%), Query Frame = 3
Query:   33 KGRGHEP*T*HGLTGRLAGVISGHV*LALEKCATVRTGDGSP*AIV*DALITS*RG*KITTPSTNNGGHITEAETYDGLHNATKNRNHIGPADVTYNGEGKRRIIKAPREEESTEVTENVIGFKKDRPRPTEASAYKDDISKESPERGLR 482
            +G G+E    +G  G   G   G+     EK      GDGS      D       G K      NNGG+  E E +DG +N  KN N+ G  D  +NGEGK    K   EEE  E      G KKD     E   +KDD SKE  E G R
Sbjct:  244 EGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELVEAIAKATGPKKDSLCFIEVIVHKDDTSKELLEWGSR 393          
BLAST of CX301254 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 54/150 (36.00%), Postives = 67/150 (44.67%), Query Frame = 3
Query:   33 KGRGHEP*T*HGLTGRLAGVISGHV*LALEKCATVRTGDGSP*AIV*DALITS*RG*KITTPSTNNGGHITEAETYDGLHNATKNRNHIGPADVTYNGEGKRRIIKAPREEESTEVTENVIGFKKDRPRPTEASAYKDDISKESPERGLR 482
            +G G+E    +G  G   G + G+   A +K      GDGS      D                NNGG+  E E +DG +N  KN N+ G  D  +NGEGK    K   EEE TE     +G KKD     E  A+KDD SKE  E G R
Sbjct:  445 EGCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALGEKKDCLCFIEVIAHKDDTSKELLEWGSR 594          
BLAST of CX301254 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.374e-11
Identity = 38/86 (44.19%), Postives = 45/86 (52.33%), Query Frame = 3
Query:  225 NNGGHITEAETYDGLHNATKNRNHIGPADVTYNGEGKRRIIKAPREEESTEVTENVIGFKKDRPRPTEASAYKDDISKESPERGLR 482
            NNGG+  E E +DG +N  KN N+ G  D  +NGEG    +K   EEE TE      G KKD     E   +KDD SKE  E G R
Sbjct:  517 NNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGNCWTMKVRTEEELTEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSR 602          
BLAST of CX301254 vs. ExPASy Swiss-Prot
Match: PDC2_MAIZE (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea mays GN=PDC2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 38/86 (44.19%), Postives = 46/86 (53.49%), Query Frame = 3
Query:  225 NNGGHITEAETYDGLHNATKNRNHIGPADVTYNGEGKRRIIKAPREEESTEVTENVIGFKKDRPRPTEASAYKDDISKESPERGLR 482
            NNGG+  E E +DG +N  KN N+ G  +  +NGEG     K   EEE TE  E  +G KKD     E   +KDD SKE  E G R
Sbjct:    9 NNGGYTIEVEIHDGPYNVIKNWNYTGLVEAFHNGEGACYTAKVRTEEELTEALEAALGPKKDCLCFIEVIVHKDDTSKELLEWGSR 94          
The following BLAST results are available for this feature:
BLAST of CX301254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PDC2_PEA5.765e-1236.00Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pis... [more]
PDC2_ORYSI5.765e-1236.00Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_TOBAC6.374e-1144.19Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC2_MAIZE8.325e-1144.19Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea... [more]
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Properties
Property NameValue
Genbank descriptionC08007F10SK PhyRootSw1 Citrus sinensis cDNA clone C08007F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301254 ID=CX301254; Name=CX301254; organism=Citrus sinensis; type=EST; length=484bp
CTCCGGCCCAATCGTTAGAAATCGAACCGTTCAAGGGACGTGGGCACGAG
CCTTAAACGTAACACGGACTAACCGGCCGGCTCGCCGGCGTCATCTCCGG
ACACGTATAGCTCGCGTTAGAGAAGTGCGCTACCGTCCGTACAGGCGACG
GCAGTCCTTAGGCAATCGTATAAGACGCGCTAATAACGTCGTGACGCGGG
TAGAAGATCACAACTCCTTCGACCAATAACGGCGGCCATATTACCGAAGC
CGAGACTTACGACGGATTGCATAACGCGACTAAGAATCGGAATCATATTG
GGCCGGCCGACGTAACTTATAACGGTGAAGGTAAGCGTCGGATAATTAAG
GCTCCTCGTGAGGAGGAGTCTACTGAAGTTACCGAGAATGTCATCGGATT
TAAGAAGGACCGTCCGCGTCCTACCGAAGCATCCGCCTATAAGGACGACA
TAAGTAAAGAGTCCCCGGAACGGGGTCTTAGGGC
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