CX046246

Overview
NameCX046246
Unique NameCX046246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX046246 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = -2 
Query:  247 QAVLSXXXXXXXXXXXXAYINIICYYFIGLPVGVLLGYVADLKVKGIWTGMLLGVVMQSLVLGYVTWKTDWDNEVKKASERL 492
            Q +LS            AY+N++ YY IGLP+G +LG+   L V GIW GM+ GV++Q+L L  +T KT+W +EV+ A++R+
Sbjct:  411 QPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
The following BLAST results are available for this feature:
BLAST of CX046246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH1.131e-1342.68Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_6G02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6G02-N4-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046246 ID=CX046246; Name=CX046246; organism=Citrus sinensis; type=EST; length=493bp
AATTAATTAACCTCAGAATATTAGATTGCATTTGCGCAGGCTCATTATCA
AGCTCTTCTTGCCAACAGACAAAAAGAAAGAAATTTGATCTGAAGTTGTT
ATTGTTGTTAACGTTAATCGGTTTATTGGCAGAGAAAATACATGCATGAT
TGAGATTATCAGGATCTTCAAGCAATATTGGACCTTAACTTGTTGAGTTT
AATTGCCGTTGGATTCTTCTTCAGAAGGCTTCAAGAGCCACTTATTGAGT
CGTTCTGATGCTTTCTTCACCTCATTGTCCCAATCGGTTTTCCAGGTGAC
ATACCCCAGCACGAGTGATTGCATTACTACCCCAAGCAGCATTCCAGTCC
AAATACCCTTAACTTTGAGATCGGCCACATATCCAAGAAGAACGCCAACA
GGTAAGCCAATGAAATAATAGCAAATGATGTTAATATATGCAACCACAGC
CTGCCGGCCAGCACCTACTGCCACCCCTGAGAGTACTGCCTGA
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