CX047311

Overview
NameCX047311
Unique NameCX047311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4536 contig Csv1_Contig4536:133..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.982e-55
Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = -3 
Query:  188 MAVPXXXXXXXXXXXXXXKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 586
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGSDKKTRHY PNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VS +KRK IVERA+QLD+VVTN+LARLRSQEDE
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 101/133 (75.94%), Postives = 112/133 (84.21%), Query Frame = -3 
Query:  188 MAVPXXXXXXXXXXXXXXKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 586
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGSDKKTRHY PNGFKKF+VHNT ELELLMMHNRTYCAEIAH++S +KRK IVERA+QLD+VV+NKL RLRSQEDE
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH  PNGF+K +VHN +ELE+LMM NR YCAEIAH VS +KRK IVERA QL I VTN  ARLRSQE+E
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H  P+GF+KF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H  P+GF+KF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H  P+GF+KF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H  P+GF+KF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H  P+GF+KF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.032e-40
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H  P+GF+KF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I +TN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of CX047311 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.317e-39
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = -3 
Query:  188 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYFPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSPRKRKEIVERAAQLDIVVTNKLARLRSQEDE 529
            R QSDR + ++ NWR+P+GID+RVR  FKG  LMPNIGYGS+KKT+H  P+GFKKF+VHN KELE+L+M N++YCAEIAH+VS + RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of CX047311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RL321_ARATH4.982e-5578.2060S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH3.229e-5475.9460S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_SPOFR6.984e-4171.0560S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_RAT1.556e-4068.4260S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG1.556e-4068.4260S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE1.556e-4068.4260S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA1.556e-4068.4260S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN1.556e-4068.4260S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_BOVIN2.032e-4067.5460S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU1.317e-3967.5460S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13D06-G12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047311 ID=CX047311; Name=CX047311; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTCGGCAATAATAATATTTTTATGAAATAAAAACT
ACTGTATTATCACTCATCCCAAAAAAAATAAAAAATCACAAACGGTCGTA
TCTTTGTAAGTCAAAATTTTCAAAATTTTGATAAAGCGTACAAAACAAGA
CTCACTACTACTAAAAAGAACAGATTGTTTAATCTCATTCATCTTCCTGG
CTTCTCAATCTAGCAAGCTTGTTAGTCACAACAATATCAAGTTGGGCAGC
TCGCTCCACAATCTCTTTCCTCTTCCTCGGGGAAACATCATGGGCAATTT
CAGCACAGTAGGTCCTGTTGTGCATCATCAACAATTCAAGCTCTTTCGTA
TTGTGCACCACAAATTTCTTGAAACCATTTGGAAAATAGTGGCGTGTCTT
CTTGTCCGAACCATAACCAATGTTGGGCATTAGAGTGCATCCCTTGAACT
TTCTTCGCACCCGGGAATCAATACCCTTTGGTCTGCGCCAATTTTCCTTG
ACGGAGATCTTGCGATCGCTCTGAGGCCTCTTGAACTTCTTCAGCCTCTT
CTTCACTATCTTCTTCGACAGTAACGGAACCGCCATCTTCCTTACCTTCT
TCCCAGTGATTTGAGCTAGGGTTCAGCTTGGCCGCGAGGCCTTTCAAAGG
GTTAGCTAAGCCT
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