CX300832

Overview
NameCX300832
Unique NameCX300832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.330e-39
Identity = 83/176 (47.16%), Postives = 120/176 (68.18%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHK---KDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L N     S+   +    N+  D N+   +     + K +++   +D  EE+  F HLP KK Y+F+ +++EI+K+T +V G++ GIS VPI L I+SP V+ L+LVDLPG+TKVPVG+QPPDIER  +++ LKYI + + IIL+V AAN D+ANSD +KLA++V
Sbjct:   60 GIVTRRPLVLQLINRRPKKSEHAKVNQTANELIDLNINDDDKKKDESGKHQNEGQSEDNKEEWGEFLHLPGKKFYNFDEIRKEIVKETDKVTGANSGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPPDIERQIKDMLLKYISKPNAIILSVNAANTDLANSDGLKLAREV 235          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.393e-37
Identity = 77/174 (44.25%), Postives = 118/174 (67.82%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKD-KNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L+NIS +    +  +N  N   +   +   E+ +   E +  +++  +E+  F H+P K+ YDF+ +K EI  +T  +AG D+GIS++PI L++FSP V+ L+LVDLPG+TKVP+G QPPDIE+  + L L YI   + +ILAV+ ANVD+ NS+++KLA++V
Sbjct:   59 GIVTRRPLVLQLNNISPNSPLIEEDDNSVNPHDEVTKISGFEAGTKPLEYRGKERNHADEWGEFLHIPGKRFYDFDDIKREIENETARIAGKDKGISKIPINLKVFSPHVLNLTLVDLPGITKVPIGEQPPDIEKQIKNLILDYIATPNCLILAVSPANVDLVNSESLKLAREV 232          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 82/173 (47.40%), Postives = 111/173 (64.16%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L N  S+  K +    + + GKD+N  S                   E+  F HLP +K ++FE ++EEI+++T E  G + GIS VPI L I+SP V+ L+LVDLPG+TKVPVG+QP DIE+   E+ LKYI + + IILAV AAN D+ANSD +KLA++V
Sbjct:   58 GIVTRRPLVLQLINRPSASGKNEETTTDSD-GKDQNNSS-------------------EWGEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREV 210          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.954e-35
Identity = 81/175 (46.29%), Postives = 113/175 (64.57%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASAT--TEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L N    L +K    ++E    D N E T +A  T   E      DE E+YA F H+PD K  D   V+ EI  +T  VAG+++GI+++PI L+I+S +V+ L+L+DLPG+TK+PVG+QP DIE  T  L ++YI   ++IILAV+ AN DI NS+ +KLA+ V
Sbjct:   57 GIVTRRPLILQLIN----LKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSV 227          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.948e-31
Identity = 76/175 (43.43%), Postives = 113/175 (64.57%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRH--KKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            G+ TRRPL L+L ++S    +K + E              E+  AT +  RH  K  E EE+  F H  +K   DF+ +++EI  +T  ++G+++G+S  PI L++FSP VV L+LVDLPG+TKVPVG+QP DIE    EL L++I   ++IILAVTAAN D+A S+A+K++++V
Sbjct:   56 GVVTRRPLILQLVHVSPEDKRKTTGE--------------ENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREV 216          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 77/175 (44.00%), Postives = 113/175 (64.57%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRH--KKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L +++    +K + E              E+  AT +  RH  K  E EE+  F H  +K   DF+ +++EI  +T  ++G+++G+S  PI L+IFSP VV L+LVDLPG+TKVPVG+QP DIE    EL L++I   ++IILAVTAAN D+A S+A+K++++V
Sbjct:   56 GIVTRRPLILQLVHVAPEDKRKTTGE--------------ENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREV 216          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            GI TRRPL L+L ++     +K S EN    G D                      GEE+  F H  +K   DF+ +++EI  +T  V+G+++GIS  PI L+IFSP VV L+LVDLPG+TKVPVG+QP DIE    EL LKYI   ++IILAVTAAN D+A S+A+K+A++V
Sbjct:   56 GIVTRRPLILQLVHVDPEDRRKTSEEN----GVD----------------------GEEWGKFLHTKNKIYTDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKDIELQIRELILKYISNPNSIILAVTAANTDMATSEALKVAREV 202          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 64/115 (55.65%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DF+ V++EI  +T  V G+++GIS VPI L ++SP V+ L+L+DLPG+TKVPVG+QPPDIE   +++ L++I  E ++ILAVT AN+D+ANSDA+KLAK+V
Sbjct:   79 EYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 64/115 (55.65%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  198 EYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            EYA F H   KK  DF+ V++EI  +T  V G+++GIS VPI L ++SP V+ L+L+DLPG+TKVPVG+QPPDIE   +++ L++I  E ++ILAVT AN+D+ANSDA+KLAK+V
Sbjct:   79 EYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEV 193          
BLAST of CX300832 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.649e-30
Identity = 70/173 (40.46%), Postives = 112/173 (64.74%), Query Frame = 3
Query:   24 GICTRRPLELRLHNISSSLSKKQSIENEENQGKDKNVESTESASATTEKKRHKKDEGEEYAVFGHLPDKKIYDFELVKEEIIKQTTEVAGSDRGISQVPIVLEIFSPKVVPLSLVDLPGVTKVPVGNQPPDIERLTEELTLKYIREEDTIILAVTAANVDIANSDAIKLAKKV 542
            G+ TRRPL L+L+  +++   + ++   E++ +D N    ++   + E          E+  FGH    + ++F+ +KEEI ++T  +AG ++ IS  PIVL+I+SPKVVPL+LVDLPG+T+V + +QPPDIE   + + + YI   ++IILA+T AN DI  SDA+KLA++V
Sbjct:  188 GLVTRRPLVLQLYQTTTT--SRNNVNENEDEDEDDNYYDNDNDDNSLE----------EWGEFGHTGTNR-FNFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSIILAITPANQDIVTSDALKLAQQV 347          
The following BLAST results are available for this feature:
BLAST of CX300832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
VPS1_YEAST4.330e-3947.16Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1_YEAST1.393e-3744.25Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
VPS1_SCHPO1.304e-3547.40Vacuolar protein sorting-associated protein 1 OS=S... [more]
YB68_SCHPO4.954e-3546.29Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DNM1L_RAT1.948e-3143.43Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DNM1L_BOVIN2.544e-3144.00Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_DANRE5.669e-3146.24Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
DYN2_RAT1.263e-3055.65Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1[more]
DYN2_MOUSE1.263e-3055.65Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2[more]
DYNB_DICDI1.649e-3040.46Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC08002G01SK PhyRootSw1 Citrus sinensis cDNA clone C08002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300832 ID=CX300832; Name=CX300832; organism=Citrus sinensis; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGGGGATCTGTACACGCAGGCCATTAGAG
CTGAGATTGCACAATATCTCATCATCTTTGAGTAAGAAACAATCAATAGA
AAATGAAGAAAATCAAGGAAAAGATAAGAATGTTGAGAGTACAGAATCAG
CATCAGCAACTACAGAAAAAAAGAGACACAAGAAAGATGAAGGAGAAGAG
TATGCTGTGTTTGGTCATTTACCAGACAAGAAGATATATGATTTTGAGTT
AGTAAAAGAAGAAATCATCAAGCAAACAACAGAGGTTGCTGGATCAGACC
GTGGAATATCTCAAGTACCAATCGTATTAGAGATATTCTCGCCTAAGGTG
GTGCCATTATCACTAGTTGATTTACCAGGAGTAACCAAGGTTCCTGTTGG
TAACCAACCTCCTGATATTGAGAGATTAACTGAGGAACTCACACTCAAAT
ACATCAGAGAGGAGGACACTATCATACTCGCAGTTACTGCAGCTAATGTA
GATATTGCAAACAGTGATGCTATTAAGCTTGCAAAGAAAGTG
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