GO242493

Overview
NameGO242493
Unique NameGO242493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.954e-27
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            EE+EI+MRFDMPGL             LVIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKTKVERKVIDVQ+
Sbjct:   85 EEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.016e-26
Identity = 63/93 (67.74%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            EE+EIKMRFDMPGL             LVIKGE + E++     G S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKTKVERKVIDVQI
Sbjct:  134 EEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.263e-26
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            +ENEIKMRFDMPGL             LVIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKTKVE+KV DV+I
Sbjct:  147 DENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            +ENEIKMRFDMPGL             LVIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT+VE+KVIDVQI
Sbjct:  140 DENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.621e-24
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            EE+EI+MRFDMPG+             LVIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKTK+ER VIDVQI
Sbjct:  138 EEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.767e-22
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            ++ E++MRFDMPGL             LVI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AELKNGVL +++PKT+VERKVIDVQ+
Sbjct:  140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of GO242493 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.133e-20
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:    2 EENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 268
            +E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD RL LPD C+K +V+AELKNGVL +S+PK + ERKVIDVQ+
Sbjct:  138 DEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
The following BLAST results are available for this feature:
BLAST of GO242493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HS22C_SOYBN5.954e-2764.58Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH1.016e-2667.7425.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_PETHY2.263e-2665.96Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC2.955e-2665.26Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA1.621e-2461.70Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS26P_ORYSJ5.767e-2253.0026.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT4.133e-2051.00Small heat shock protein, chloroplastic OS=Triticu... [more]
back to top
Properties
Property NameValue
Genbank description1141 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1310 5, mRNA sequence.