GO242483

Overview
NameGO242483
Unique NameGO242483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242483 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.680e-36
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 2
Query:    5 LMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 265
            LMD G+QSGDVIMRMMARNSMSEKLAEDID AVKRLSD AYEIALSQIR+NREA+DKIVEVLLEKET+SGDEFRAILSEF EIP ENR
Sbjct:  578 LMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENR 665          
BLAST of GO242483 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 2
Query:    5 LMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 265
            LMD S+  DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQIRNNREA+DKIVE+LLEKETMSGDEFRAILSEF EIP ENR
Sbjct:  584 LMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENR 670          
BLAST of GO242483 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 2
Query:    5 LMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 265
            LMD S   DVIMRMMARNSMSEKLAEDID+AVK+LSD AYEIALS I+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP ENR
Sbjct:  591 LMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENR 677          
BLAST of GO242483 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.633e-24
Identity = 52/78 (66.67%), Postives = 67/78 (85.90%), Query Frame = 2
Query:   20 QSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 253
            +  DV++RM+ARNSMSEKLAEDID+ VK++   AYE+A   +RNNREAIDK+V+VLLEKET++GDEFRAILSE+ + P
Sbjct:  594 KQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQP 671          
BLAST of GO242483 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.661e-24
Identity = 52/83 (62.65%), Postives = 69/83 (83.13%), Query Frame = 2
Query:   17 SQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 265
            +Q GDV++RM+AR+SMSE+LA DIDAAV+ + D AYE+A + +R NR AID++V+VL+EKET+ GDEFRAILSE V+I  E R
Sbjct:  592 AQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKERR 674          
BLAST of GO242483 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 31/85 (36.47%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   17 SQSGDVIMR--MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 265
            S  G+V +   +M R+  SE++A  IDA V++L+++ +++A   ++  RE +D++V++L+EKET+ G+EFR I++E+ E+P + +
Sbjct:  538 SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQ 622          
The following BLAST results are available for this feature:
BLAST of GO242483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FTSH2_ORYSJ6.680e-3689.77Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH4.330e-3586.21Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH1.819e-3382.76Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH2.633e-2466.67Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ7.661e-2462.65Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH1_SYNY32.312e-1236.47Cell division protease ftsH homolog 1 OS=Synechocy... [more]
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Properties
Property NameValue
Genbank description1131 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1298 5, mRNA sequence.