GO242470

Overview
NameGO242470
Unique NameGO242470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242470 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.548e-22
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 VELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 244
            VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:  116 VEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of GO242470 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.337e-20
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 VELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 244
            VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:  117 VELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of GO242470 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    2 VELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 244
            VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  147 VEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of GO242470 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 2
Query:    2 VELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 244
            VE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   89 VEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of GO242470 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 2
Query:    2 VELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 244
            VE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   84 VEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
The following BLAST results are available for this feature:
BLAST of GO242470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA3.548e-2264.20Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL4.337e-2055.56Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.886e-1550.60High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.494e-1243.90Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.951e-1243.90Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank description1118 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1284 5, mRNA sequence.