GO242468

Overview
NameGO242468
Unique NameGO242468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242468 vs. ExPASy Swiss-Prot
Match: PP1R7_DICDI (Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  395 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITT 754
            ++A   +  I  +     ++++ L +N +  I        + TL L RNKI  I+G+  ++ LR+L L  NR+  IG  GL     ++ELYL+ N I+DI+GL  L +L  LD+S NKI T
Sbjct:  144 YLANNKITKIENLQELVPIKNLELGSNRLREIENLENLVNIETLWLGRNKITEIKGINHLSHLRILSLQSNRLTEIGVKGLVGLNCLEELYLSHNGITDIDGLQSLKQLRTLDISANKIKT 264          

HSP 2 Score: 68.9366 bits (167), Expect = 4.757e-11
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  422 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLS--NCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKLLSASANYQSL 793
            I  I+H  +L+ +    N I  I      K L +L+L  NK+  IE +++   L  LDLS+N I RI   LS  +   IKELYLA NKI+ IE L  L+ +  L++  N++   + L    N ++L
Sbjct:   63 IENINHLKNLKKLCFRQNLIEKIENIDQLKELESLDLYDNKLQVIENIKDFQSLTYLDLSFNEI-RIVENLSIKDIPKIKELYLANNKITKIENLQELVPIKNLELGSNRLREIENLENLVNIETL 187          
The following BLAST results are available for this feature:
BLAST of GO242468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP1R7_DICDI2.523e-1235.54Protein phosphatase 1 regulatory subunit pprA OS=D... [more]
back to top
Properties
Property NameValue
Genbank description1116 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1282 5, mRNA sequence.