GO242430

Overview
NameGO242430
Unique NameGO242430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of GO242430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_WHEAT4.044e-2598.25Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN4.044e-2598.25Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU4.044e-2598.25Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC4.044e-2598.25Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR4.044e-2598.25Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA4.044e-2598.25Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ4.044e-2598.25Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY4.044e-2598.25Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE4.044e-2598.25Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO4.044e-2598.25Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank description1078 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1241 5, mRNA sequence.