GO242380

Overview
NameGO242380
Unique NameGO242380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 2
Query:   47 KEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 325
            KEP S+ CLVRL  G EK+ID RCRATIG VSNP+HGA+KL KAGQ  W GRR +VRGVAM PVDHPH    +     GR S +PWGKP K+G
Sbjct:  400 KEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKAG 490          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 2
Query:   47 KEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 325
            KEP S+ CLVRL  G EK+ID RCRATIG VSNP+HGA+KL KAGQ  W GRR +VRGVAM PVDHPH    +     GR S +PWGKP K+G
Sbjct:  400 KEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKAG 490          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.955e-26
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 2
Query:   47 KEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSG 325
            KEP S+ CLVRL  G EK+ID RCRATIG VSNP+HGA+KL KAGQ  W GRR +VRGVAM PVDHPH    +     GR S +PWGKP K+G
Sbjct:  400 KEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKAG 490          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 6.162e-24
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 2
Query:   35 QDFEKEPTSRYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKK 352
            Q  +K   +  C+VRL  G +K+ID RCRATIG VSN +HG +K +KAGQ  WLGRR +VRGVAM PVDHPH    +     GR S +PWGKP K G  T   K++
Sbjct:  396 QIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPH-GGGEGRTKGGRPSVSPWGKPTKGGFKTVVRKRR 500          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   65 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKKEK 358
            Y +VRL  G ++++  RCR TIG VSNP H    + KAG++ W+GRR   RGVAM P+DHPH    +   + GR   TPWGKP K G  T + K  +K
Sbjct:  171 YVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPH-GGGEGRTSGGRHPVTPWGKPTK-GKKTRTNKSTDK 266          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   65 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKKEK 358
            Y +VRL  G ++++  RCR TIG VSNP H    + KAG++ W+GRR   RGVAM P+DHPH    +   + GR   TPWGKP K G  T + K  +K
Sbjct:  171 YVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPH-GGGEGRTSGGRHPVTPWGKPTK-GKKTRTNKSTDK 266          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 2
Query:   65 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKKEK 358
            Y +VRL  G ++++  RC ATIG VSNP H    + KAG++ WLGRR   RGV M P+DHPH    +   + GR   TPWGKP K G  T S K  +K
Sbjct:  171 YVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPH-GGGEGRTSGGRHPVTPWGKPTK-GKKTRSNKSTDK 266          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   65 YCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPHVERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKKEK 358
            Y ++RL  G ++++  RCR TIG VSNP H    + KAG+  WLGR+   RGV+M P+DHPH    +   + GR   TPWGKP K G  T S K   K
Sbjct:  171 YVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRKPHNRGVSMNPIDHPH-GGGEGRTSGGRHPVTPWGKPTK-GKKTRSNKSTNK 266          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.126e-17
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   62 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPH-VERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKKEKSA 364
            +Y L+RLR G  ++I   C+ATIG VSNP H  +KL KAG+  WLG R  VRGVAM PVDHPH     K+SG  GR   TPWG   K        +K+ KS+
Sbjct:  170 QYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGKTSG--GRHPVTPWGVATKG----KKTRKRNKSS 265          
BLAST of GO242380 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   62 RYCLVRLRCGNEKVIDPRCRATIGTVSNPSHGAKKLSKAGQRSWLGRRAVVRGVAMIPVDHPH-VERSKSSGNNGRCSFTPWGKPCKSGN*TASPKKKEK 358
            +Y L+RLR G  ++I   C+ATIG VSNP H  +KL KAG+  WLG R  VRG+AM PVDHPH     K+SG  GR   TPWG   K        K  +K
Sbjct:  170 QYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRWLGIRPTVRGIAMNPVDHPHGGGEGKTSG--GRHPVTPWGVATKGKKTRRRNKSSDK 267          
The following BLAST results are available for this feature:
BLAST of GO242380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM02_ORYSJ2.955e-2664.5260S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI2.955e-2664.5260S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA2.955e-2664.5260S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO6.162e-2452.8360S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RL2_BRASO1.736e-1846.9450S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_BRASB1.736e-1846.9450S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_RHOPS3.868e-1847.9650S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_BRAJA8.618e-1845.9250S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_WOLWR1.126e-1750.0050S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_WOLPM1.920e-1749.0050S ribosomal protein L2 OS=Wolbachia pipientis wM... [more]

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Properties
Property NameValue
Genbank description1028 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1187 5, mRNA sequence.