GO242375

Overview
NameGO242375
Unique NameGO242375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242375 vs. ExPASy Swiss-Prot
Match: ATX2_DICDI (Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.971e-13
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    1 EERELEPWIPDEDVPQLPELENIFDDPWNSK-----KWDQFETNETLFGVKTTFNEELYTTKLLRGPQTXXXXXXXXXXXXXXXXXD-TQDLHLAEERGSSIHENLGIDEETRFSSVYR 339
            +EREL PW PD  V      E++ D   NS+      WDQFETNE LFGV+TT+ EE+YTT+L R  +                  + + ++HL EERG    E    DEE R+SSV R
Sbjct:  196 KERELTPWTPDPSVG-----ESLDDFAANSEAKKPANWDQFETNEKLFGVRTTYEEEIYTTRLDRDSEFYKINQSVAEKKAQEIENEKSGNIHLLEERG--FVEGADYDEEERYSSVVR 307          
BLAST of GO242375 vs. ExPASy Swiss-Prot
Match: YHZ3_SCHPO (Uncharacterized protein C21B10.03c OS=Schizosaccharomyces pombe GN=SPBC21B10.03c PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.441e-12
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    4 ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLRG-PQTXXXXXXXXXXXXXXXXXDTQDLHLAEERGSSIHENLGIDEETRFSSVYR 339
            +REL  W+PD +   +P      ++  ++ +WDQF TNE LFGVK+ F+E+LYT+++ R  P+                   T ++H+AEERG  + ++ G+DEE  +S V+R
Sbjct:  117 QRELRRWMPDPEDAGVPLAG--LEESTDNVEWDQFATNEKLFGVKSHFDEDLYTSRIDRSHPKYKEKEQEADRIAKEIEGTVTNNIHIAEERGLKVDDS-GLDEEDLYSGVHR 226          
The following BLAST results are available for this feature:
BLAST of GO242375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATX2_DICDI9.971e-1341.18Ataxin-2 homolog OS=Dictyostelium discoideum GN=at... [more]
YHZ3_SCHPO8.441e-1235.40Uncharacterized protein C21B10.03c OS=Schizosaccha... [more]
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Properties
Property NameValue
Genbank description1023 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1182 5, mRNA sequence.