GO242301

Overview
NameGO242301
Unique NameGO242301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_ARATH (Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2)

HSP 1 Score: 417.157 bits (1071), Expect = 8.013e-116
Identity = 215/316 (68.04%), Postives = 256/316 (81.01%), Query Frame = 2
Query:    5 MLINEVAASQGIKIRRRPPTGPPLHYAGPFQFRIQN-EGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES-**ADDPGKGY-WTFGKDIS 943
            M   E+A SQGI+IRR+PP+  PL Y+GPF+ R+ N + ++PRNILEEI W+KDVEVS++K+  PL +LKKA+++APP+RDF+GAL  A++RTG P LIAEVKKASPSRGIL+E+FDPVEIA++YEKGGAACLS+LTD+KYF+G FENLEA+RSAGVKCPLLCKEF+VD WQIYYARTKGADAVLLIAAVL DL+I ++ KICK L L ALVEVHDEREM RV                 TFEVD SNTKKLLEGE G  IR++++IVVGESGLFTPDDIAYVQ AGVKAVL GES    +DP KG    FG++IS
Sbjct:   85 MYQEELAISQGIRIRRKPPSKAPLGYSGPFELRLHNNDADSPRNILEEITWYKDVEVSRMKELNPLDVLKKAVEDAPPTRDFVGALRMAHKRTGFPGLIAEVKKASPSRGILKENFDPVEIAQAYEKGGAACLSVLTDQKYFQGGFENLEAIRSAGVKCPLLCKEFVVDPWQIYYARTKGADAVLLIAAVLADLEITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNIS 400          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_MICAN (Indole-3-glycerol phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=trpC PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.188e-72
Identity = 151/284 (53.17%), Postives = 192/284 (67.61%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRR+ P   P        + ++     P+NILEEIVWHK++EV +L++R PL  L++ + N  P  DF+ AL     +   PALIAEVKKASPS+G++ EDFDPV IAR+YE+GGA CLS+LTD K+F+GS+ENL  VR A V  PLLCKEFI+  +QIYYAR+KGADAVLLIAA+L D D+ Y  KI K LG+TALVEVH   E DRV                 TF VD  NT++LLE  RGE +R+K I++V ESGL T  D+A V++AG  AVL GES
Sbjct:    1 MQIRRKHPN--PAVKVESLSYVVKVPEAQPQNILEEIVWHKEIEVDKLRERLPLLELRQKIANTAPPCDFLAALKQGKTQ---PALIAEVKKASPSKGVILEDFDPVAIARTYEQGGATCLSVLTDSKFFQGSYENLTLVRQA-VSLPLLCKEFILYPYQIYYARSKGADAVLLIAAILSDQDLAYFVKIVKGLGMTALVEVHSLAEFDRVLAIEGIELIGINNRNLETFTVDLDNTRQLLEA-RGEQVREKGILIVSESGLHTATDLAKVKQAGANAVLIGES 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP8 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=trpC PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 4.603e-71
Identity = 147/284 (51.76%), Postives = 193/284 (67.96%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRR P  PP+      +++++     PR+ILEEIVWHK+ EV +L++  PL  L+K + + PP +DF+GA+     +   PALIAEVKKASPS+G++REDFDPV IA++Y KGGA+CLS+LTD K+F+GSFENL  VR + V  PLLCKEFI+  +QIY ARTKGADAVLLIAA+L D D+ Y  KI + LG+TAL+EVH   E+DRV                 TFEVD   T +LL   R + I+   I ++ ESGL TPDD+ +VQ+AG   VL GES
Sbjct:    1 MQIRRRSPN-PPVE-VDTLRYQVKVPDGEPRHILEEIVWHKEKEVDRLRESLPLLELRKQVQHLPPPQDFLGAITQGKTQ---PALIAEVKKASPSKGVIREDFDPVAIAQAYVKGGASCLSVLTDAKFFQGSFENLALVRQS-VDLPLLCKEFILYPYQIYLARTKGADAVLLIAAILSDRDLSYFLKIIQTLGMTALIEVHSLTELDRVLAIEGVSLIGINNRNLETFEVDLKTTSQLLAARRDK-IQALGIKIISESGLHTPDDLQFVQQAGSDGVLIGES 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP4 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpC PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 6.647e-70
Identity = 148/284 (52.11%), Postives = 190/284 (66.90%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRP    P+      +F+++    TPRNILEEIVWHK+VEV Q+++R PL  L+K +  APP RDF+ AL  A  +   PALIAEVKKASPS+G+LRE+FDPV IA++Y   GAACLS+LTDEK+F+GSF  L  +R A V  PLLCKEFI+  +Q+Y AR++GADAVLLIAA+L D D++Y  KI   LG+ AL+EVH   E+DRV                  F VD   T  LL  +R + + Q+NI+VV ESGL+   D+  VQ AG KAVL GES
Sbjct:    1 MQIRRRPN---PVVAVQELRFQVKAPDATPRNILEEIVWHKEVEVEQMRERAPLLELRKQVQTAPPPRDFVAALRQAQYQ---PALIAEVKKASPSKGVLREEFDPVAIAQAYATAGAACLSVLTDEKFFQGSFTYLNQIRQA-VHLPLLCKEFIIYPYQMYLARSQGADAVLLIAAILSDQDLQYFLKIATSLGMAALIEVHTLTELDRVLNLEGVSLVGINNRNLENFTVDLQTTCDLL-SKRWDQLDQRNILVVSESGLYQAVDLQQVQTAGAKAVLIGES 276          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_SYNY3 (Indole-3-glycerol phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=trpC PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 5.627e-69
Identity = 148/284 (52.11%), Postives = 195/284 (68.66%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRPP  PP+      Q++I++    PR+ILEEIVWHK+ EV+Q ++  PL  L+  + +  P  DF+GAL  + ++   PALIAEVKKASPS+GI+R DFDPV IA++YE GGA CLS+LTDEK+F+GSFENL+ VRSA V+ PLLCKEFI+  +QIY AR++GADAVLLIAA+L D D+RY  KI + LG+ ALVEVH   EMDRV                 TF VD   T+ L   +R E + Q +I +V ESG++   D+  +Q+AG +AVL GES
Sbjct:    1 MEIRRRPPN-PPIK-VDILQYQIKHPEAAPRHILEEIVWHKEKEVAQRRELVPLVKLQSLVKDMTPPLDFVGALRQSPRQ---PALIAEVKKASPSKGIIRADFDPVAIAKAYEAGGANCLSVLTDEKFFQGSFENLQLVRSA-VQLPLLCKEFIIYPYQIYLARSRGADAVLLIAAILSDKDLRYFLKIIEGLGMAALVEVHTLEEMDRVLALDGVQLIGVNNRNLQTFTVDLQTTEDLF-AQRREQLTQGDITLVSESGIYELADLQRLQQAGARAVLVGES 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_CYAA5 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=trpC PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.532e-66
Identity = 139/284 (48.94%), Postives = 187/284 (65.85%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRPP   P       ++++ +      +ILEEIVWHK+ EV +++ R  L  L+K   +APP++DF+GA+   +Q    PALIAEVKKASPS+G++REDF+PV IA++Y +GGA+CLS+LTD K+F+GSF+NL  VR A V  PLLCKEFI+  +QIY AR KGADA+LLIAA+L D D++Y+ KI   LG+T LVEVH   E+DRV                 TFEV    T  L+   + E I+++ I +V ESG+ TP  +  V EAG  AVL GES
Sbjct:    1 MQIRRRPPN--PAVEVDILRYQVPDPNGKANHILEEIVWHKEKEVERMRDRLSLLDLRKQEQSAPPAKDFLGAI---SQGKTQPALIAEVKKASPSKGVIREDFEPVAIAQAYVQGGASCLSVLTDSKFFQGSFDNLALVRQA-VDIPLLCKEFIIYPYQIYLARVKGADAILLIAAILKDSDLQYLIKIIHGLGMTPLVEVHSLAELDRVLAIEGVSLVGINNRNLETFEVSLETTTNLITARQDE-IKERGIYIVSESGIHTPQHLQQVTEAGANAVLIGES 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_SYNSC (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=trpC PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 5.823e-66
Identity = 135/284 (47.54%), Postives = 188/284 (66.20%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRPP   P       ++ + ++   PR+ILE+IVW KD E+   + + PL  LK+ +   PP++DF+GAL AA  +   PA+IAEVKKASPS+G++REDFDPV IA++Y  GGA+CLS+LTD+ +F+G F+ L  VR A V  PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D+RY+ K    LGLT LVEVHD  EMDRV                 +FE D + T++LL  +  + ++Q+ +++V ESGLF+  D+  VQ AG  AVL GE+
Sbjct:    1 MEIRRRPPN--PKVRVAHLEYAVPHDDEEPRHILEKIVWEKDREIDAARDKVPLDNLKQQIAKLPPTKDFLGALQAAATK---PAVIAEVKKASPSKGVIREDFDPVAIAKAYASGGASCLSVLTDKTFFQGGFDVLVEVRQA-VDLPLLCKEFVLSPYQLFQARAAGADAVLLIAAILSDQDLRYLNKAAAALGLTVLVEVHDATEMDRVLSIGGFPLIGINNRDLTSFETDLATTERLLV-DFNDRLKQQGVLLVSESGLFSRADLDRVQAAGAGAVLVGEA 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_SYNS3 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=trpC PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 4.929e-65
Identity = 135/284 (47.54%), Postives = 185/284 (65.14%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRPP   P       ++ + ++ + PRNILE+IVW KD E++  ++R PL  L++ + + PP+RDF+GAL AA  R   PA+IAEVKKASPS+G++REDFDPV IA++Y  GGA+CLS+LTD+ +F+G F  L  VR A V  PLLCK+FI+  +Q+Y AR  GADA LLIAA+L D D+ Y  K+   LGLT LVEVHD  E+ RV                 +FE D + T + L  +  E + ++ I++V ESGLF   D+  VQ AG +AVL GE+
Sbjct:    1 MEIRRRPPN--PKVQVAHLEYAVPDQDSEPRNILEKIVWEKDREIAVARERMPLEQLRRKVADLPPARDFLGALSAAAVR---PAVIAEVKKASPSKGVIREDFDPVAIAKAYASGGASCLSVLTDKAFFQGGFNVLIEVREA-VDLPLLCKDFILSPYQLYQARAAGADAALLIAAILTDQDLAYFAKVAAALGLTVLVEVHDAEELQRVLALGGFPLIGINNRDLTSFETDLATT-ETLTAQFAEQLLEQQILLVSESGLFHRADLDRVQAAGAQAVLVGEA 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_PROM4 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=trpC PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.438e-65
Identity = 137/284 (48.24%), Postives = 183/284 (64.44%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRPP   P       ++ I +E   PRNILE+I+W KD EV   ++R PLS LK  ++N P ++DF+GAL    Q +  PA+IAE+KKASPS+G++RE+FDP+EIA +Y+ GGA CLS+LTD+ +F+G FE L  VR   V  PLLCKEFI+  +QIY AR  GADAVLLIAA+L D D+ Y+ K+   LGLT LVEVHD  E+ RV                 TF  D   TK++++ E  + I ++ +++V ESGLF   D+  V   G KAVL GES
Sbjct:    1 MEIRRRPPN--PKVKVANLEYAIPHEDGEPRNILEKILWEKDREVKVSRERVPLSELKAQINNLPQTKDFLGAL---RQSSTSPAVIAEIKKASPSKGVIRENFDPIEIALAYKLGGATCLSVLTDKSFFQGGFEVLVQVRKT-VDLPLLCKEFIIQPYQIYQARVAGADAVLLIAAILSDQDLLYLRKVAISLGLTILVEVHDSNELKRVLDLEGFPLVGINNRDLKTFNTDLRTTKEVVK-EHKKRISEQEVLLVSESGLFNSADLEEVSSYGAKAVLVGES 277          
BLAST of GO242301 vs. ExPASy Swiss-Prot
Match: TRPC_SYNR3 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain RCC307) GN=trpC PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.098e-64
Identity = 135/284 (47.54%), Postives = 184/284 (64.79%), Query Frame = 2
Query:   38 IKIRRRPPTGPPLHYAGPFQFRIQNEGNTPRNILEEIVWHKDVEVSQLKQRRPLSMLKKALDNAPPSRDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLGGES 889
            ++IRRRPP   P       ++ + ++   PR+ILEEIVW KD EV+Q ++R PL  LK  +   P  RDF+ AL A+ ++   PA+IAEVKKASPS+G++REDFDP  IA++Y +GGA+CLS+LTD+++F+G FE L  VR   V  PLLCKEFI+  +Q+Y AR  GADAVLLIAA+L D DI Y+ K+ + LGL  L+EVHD  E++R                  +F+ D + T + L    GE +RQ   ++V ESGLF+ DD+  VQ AG  AVL GE+
Sbjct:    1 MEIRRRPPN--PKVRVAHLEYAVPHDDEAPRHILEEIVWEKDREVAQARERVPLEKLKSQVAALPAPRDFVAALKASCRK---PAVIAEVKKASPSKGVIREDFDPEAIAKAYAEGGASCLSVLTDKRFFQGGFEVLVQVRQV-VDLPLLCKEFILSPYQLYQARAAGADAVLLIAAILTDQDISYLLKVARSLGLQVLLEVHDAAELERALGFEGVQLIGINNRDLTSFDTDLATT-ETLTATYGEQLRQSGALLVSESGLFSRDDLDRVQSAGADAVLVGEA 277          
The following BLAST results are available for this feature:
BLAST of GO242301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
TRPC_ARATH8.013e-11668.04Indole-3-glycerol phosphate synthase, chloroplasti... [more]
TRPC_MICAN3.188e-7253.17Indole-3-glycerol phosphate synthase OS=Microcysti... [more]
TRPC_CYAP84.603e-7151.76Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_CYAP46.647e-7052.11Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNY35.627e-6952.11Indole-3-glycerol phosphate synthase OS=Synechocys... [more]
TRPC_CYAA51.532e-6648.94Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNSC5.823e-6647.54Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNS34.929e-6547.54Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_PROM46.438e-6548.24Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_SYNR31.098e-6447.54Indole-3-glycerol phosphate synthase OS=Synechococ... [more]

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Properties
Property NameValue
Genbank description949 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone T1098 5, mRNA sequence.