GO242177

Overview
NameGO242177
Unique NameGO242177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO242177_ssr131 microsatellite GO242177_ssr131:131..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of GO242177 vs. ExPASy Swiss-Prot
Match: DPOLA_ORYSJ (DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 45/112 (40.18%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    1 DDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSXXXXXXXXXXXXXNNQNVKKPNPSLTAAAAMMGKQRLSAMLTSTAM---FXXXXXXXXXXXXXXIDEVLAEFAPDEAD 327
            DDGLGY D+G+EEDW+   + SSSD+ S DG+                         SL+AAAAMMGKQRLS+M TS+                    +D+V+AEFAPD+ D
Sbjct:   81 DDGLGYADDGREEDWTHRTIHSSSDEGS-DGEDGAPRKRKQPRPQSKRPPQQSAAAASLSAAAAMMGKQRLSSMFTSSVFRKPGSDRGRDSSLAADSIVDDVIAEFAPDDND 191          
BLAST of GO242177 vs. ExPASy Swiss-Prot
Match: DPOLA_ARATH (DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana GN=POLA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.020e-11
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   10 LGYGDEGQEEDWSVAGLPSSSDDESLDGQRSXXXXXXXXXXXXXNNQNVKKPNPSLTAAAAMMGKQRLSAMLTSTAMFXXXXXXXXXXXXXXIDEVLAEFAPDEAD 327
            LGY DEG+EEDWS    P S+D+    G+ S                 VKK NP+L AAA + G+ RLS+M TS++ F              +DE++A+  PDE+D
Sbjct:   86 LGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLKKKKKGKEQTQQPQVKKVNPALKAAATITGEGRLSSMFTSSS-FKKVKETDKAQYEGILDEIIAQVTPDESD 190          
The following BLAST results are available for this feature:
BLAST of GO242177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DPOLA_ORYSJ2.054e-1240.18DNA polymerase alpha catalytic subunit OS=Oryza sa... [more]
DPOLA_ARATH1.020e-1137.74DNA polymerase alpha catalytic subunit OS=Arabidop... [more]
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Properties
Property NameValue
Genbank description825 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 971 5, mRNA sequence.