GO242174

Overview
NameGO242174
Unique NameGO242174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13800 contig Csv1_Contig13800:1..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO242174 vs. ExPASy Swiss-Prot
Match: RU1C_XENLA (U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrp1c PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.557e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  137 MPRYYCDYCDTYLAHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 334
            MP++YCDYCDTYL HDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of GO242174 vs. ExPASy Swiss-Prot
Match: RU1C_MOUSE (U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.557e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  137 MPRYYCDYCDTYLAHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 334
            MP++YCDYCDTYL HDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of GO242174 vs. ExPASy Swiss-Prot
Match: RU1C_HUMAN (U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.557e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  137 MPRYYCDYCDTYLAHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 334
            MP++YCDYCDTYL HDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of GO242174 vs. ExPASy Swiss-Prot
Match: RU1C_DICDI (U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum GN=snrpC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.469e-17
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  137 MPRYYCDYCDTYLAHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTP 400
            MP+YYCDYCD YL HDSPSVRK H  G +HK  V+ +YQQFE + TQSLI+ R+KE+              ++  L  +P + ++PTP
Sbjct:    1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEY------------EESKGRLIHQPPMGIIPTP 76          
BLAST of GO242174 vs. ExPASy Swiss-Prot
Match: RU1C_BOVIN (U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.531e-17
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  137 MPRYYCDYCDTYLAHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 334
            MP+ YCDYCDTYL HDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKLYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
The following BLAST results are available for this feature:
BLAST of GO242174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RU1C_XENLA1.557e-1763.64U1 small nuclear ribonucleoprotein C OS=Xenopus la... [more]
RU1C_MOUSE1.557e-1763.64U1 small nuclear ribonucleoprotein C OS=Mus muscul... [more]
RU1C_HUMAN1.557e-1763.64U1 small nuclear ribonucleoprotein C OS=Homo sapie... [more]
RU1C_DICDI3.469e-1747.73U1 small nuclear ribonucleoprotein C OS=Dictyostel... [more]
RU1C_BOVIN4.531e-1763.64U1 small nuclear ribonucleoprotein C OS=Bos taurus... [more]
back to top
Properties
Property NameValue
Genbank description822 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 968 5, mRNA sequence.