GO242172

Overview
NameGO242172
Unique NameGO242172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 298
            DELA+ GL DEDIF+ +V+D+WR FMK QI RAR F+  AE+G  EL+KASRWPVW  L+LY++ILD I+ NDYDN TKRAYV   KK+  +  AY RA
Sbjct:  319 DELAQAGLSDEDIFAGRVTDKWRNFMKNQIKRARMFFDEAEKGVLELNKASRWPVWASLLLYRQILDEIEANDYDNFTKRAYVSKAKKILALPMAYGRA 417          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 298
            DELA+ GL DEDIF+ KV+D+WR FMK Q+ RAR F+  AE+G +EL  ASRWPVW  L+LY++ILD I+ NDY+N TKRAYVG +KK+  +  AY ++
Sbjct:  313 DELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKS 411          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.439e-28
Identity = 57/96 (59.38%), Postives = 75/96 (78.12%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAY 289
            DELA+ GL DED+F+ KV+D+WR FMK QI RAR F++ AE+G +EL +ASRWPVW  L+LY++ILD I+ NDY+N TKRAYV  +K+L  +  AY
Sbjct:  310 DELAEAGLSDEDVFTGKVTDKWRSFMKRQIKRARTFFEQAEKGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKVKRLAALPLAY 405          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAY 289
            DELA+ GL DEDIF   V++ WR FMK QI RAR F++ AE G +EL +ASRWPVW  L+LY++ILD I+ NDY+N TKRAYVG  KKL  +  AY
Sbjct:  300 DELAQAGLSDEDIFKGVVTNRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKGKKLLALPVAY 395          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 59/99 (59.60%), Postives = 71/99 (71.72%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 298
            +EL   G+  E IF  KV+D+WR FMK QI RAR F+  AE+G +EL  ASRWPVW  L+LY++ILDAI+ NDYDN TKRAYVG  KKL  +  AY RA
Sbjct:  292 EELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRA 390          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 60/106 (56.60%), Postives = 77/106 (72.64%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRAQSISTAT 319
            DELA+ GL DEDIF+ +V+D+WR FMK+QI RAR F+  AE+G +EL  ASR+PVW  L+LY+KILD I+ NDY+N TKRAYV   KKL  +  AY ++    T T
Sbjct:  302 DELAQAGLSDEDIFAGRVTDKWRIFMKKQIHRARKFFDEAEKGVTELSSASRFPVWASLVLYRKILDEIEANDYNNFTKRAYVSKSKKLIALPIAYAKSLVPPTKT 407          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.887e-26
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 298
            DELA+ GL DEDIF+ KV+D+WR FMK+QI RAR F+  AE+G +EL  ASRWPV   L+LY+KILD I+ NDY+N T+RAYV   KKL  +  AY R+
Sbjct:  198 DELAQAGLSDEDIFAGKVTDKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARS 296          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 60/106 (56.60%), Postives = 77/106 (72.64%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRAQSISTAT 319
            DELA+ GL DEDIF+ +V+D+WR FMK+QI RAR F+  AE+G +EL  ASRWPV   L+LY++ILD I+ NDY+N TKRAYV   KKL  +  AY ++   ST T
Sbjct:  314 DELAQAGLSDEDIFAGRVTDKWRIFMKKQIQRARKFFDEAEKGVTELSAASRWPVLASLLLYRRILDEIEANDYNNFTKRAYVSKPKKLIALPIAYAKSLVPSTRT 419          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: CRTY_SPIPL (Phytoene synthase OS=Spirulina platensis GN=crtB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRAQ 301
            D+LA F   + D+ + KV + WRE M+ QI RAR FY LAEEG + L    RWPVWT L+LY++ILD I+ N+YD   +RAYV   KK+  +  A  RA+
Sbjct:  208 DDLALFNYTEADLLNGKVDERWRELMRFQIQRARKFYTLAEEGIAALHPDIRWPVWTALMLYRQILDEIERNEYDVFNQRAYVPTWKKMMCLPLAQLRAR 307          
BLAST of GO242172 vs. ExPASy Swiss-Prot
Match: CRTB_SYNE7 (Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 2
Query:    2 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 298
            +ELA+F   ++D+F+  + D WR FM+ Q+ RAR +++ AE G  +L   +RWPVW  L+LY++ILD I+ N+YD   KRAYV   +KL  +  A  RA
Sbjct:  207 EELAQFNYSEQDLFNGVIDDRWRAFMQFQLDRARDYFEQAERGIRQLSHDARWPVWASLMLYREILDVIEQNNYDVFRKRAYVPTWRKLCSLPVAMLRA 305          
The following BLAST results are available for this feature:
BLAST of GO242172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSY_CUCME2.382e-2961.62Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_ARATH2.016e-2858.59Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_NARPS3.439e-2859.38Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY_MAIZE4.966e-2760.42Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY_DAUCA1.106e-2659.60Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
PSY1_SOLLC1.106e-2656.60Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY2_SOLLC1.887e-2659.60Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
PSY_CAPAN2.465e-2656.60Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
CRTY_SPIPL9.071e-2149.00Phytoene synthase OS=Spirulina platensis GN=crtB P... [more]
CRTB_SYNE74.977e-1944.44Phytoene synthase OS=Synechococcus elongatus (stra... [more]

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Properties
Property NameValue
Genbank description820 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 966 5, mRNA sequence.