GO242170

Overview
NameGO242170
Unique NameGO242170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT61_ARATH (VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 6.830e-98
Identity = 172/199 (86.43%), Postives = 185/199 (92.96%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MKITALLVLKC P+ SDPV+L+ A DVSHFGYFQRSSVKEF++FV RTV  RTPP QRQSVQHEEYKVH+YNRNGLC +GFMDDHYPVRS+FSLLNQVLDEYQK+FGESWR+A+ D+ QPWPYL EALNK+QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS ASQMFYKQAKKTN CCTIL
Sbjct:    1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKKTNSCCTIL 199          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT62_ARATH (VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 6.207e-83
Identity = 150/201 (74.63%), Postives = 175/201 (87.06%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQ--RSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MKITALLVLKC+P+  +PV+LA   D+S FG F   RS+ +EFI+F+ARTV +RTPPGQRQSV+HEEYKVH+YN NGLC +GFMDDHYPVRS+FSLLNQVLD YQK++G++WR   +   QPWPYL EA +K++DPAEADKLLKIQRELDETKIILHKTID VLARGEKLDSLVEKSS+LS AS+MFYKQAKKTN CCT+L
Sbjct:    1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRFENSS--QPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMFYKQAKKTNSCCTLL 199          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_ASHGO (Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.202e-47
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRT-AQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MKI ++ +L+ +  G+  + L +A D+S FG+F+R+ V +F+ F   TV  RT  GQRQS++   Y  H Y+R+ GLC +   D  YPVR +++LLN+VLDEY      + WR  AQ  +      L   L KYQDP++AD ++++Q+ELDETKI+LHKTI+SVL RGEKLD+LV+KS  LSA+S+MFYKQAKKTN CC I+
Sbjct:    1 MKIYSIAILRNS--GNKALELCSAKDLSQFGFFERNGVSQFMTFFGETVAGRTGAGQRQSIEEGNYVGHVYSRSEGLCGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPAEWRDIAQTSDQLKLRELEMYLAKYQDPSQADSIMRVQQELDETKIVLHKTIESVLQRGEKLDNLVDKSESLSASSRMFYKQAKKTNSCCLIM 200          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.223e-46
Identity = 99/201 (49.25%), Postives = 139/201 (69.15%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTI 697
            MK+ ++ +L+ +P    PV +L TA D+S F +FQRSS+ EF+ F  +TV +RT PGQRQ V+   Y  H YNR+ GLC +   D  YP+R +++LLN++LDE+  KN    W +        +P L+  L+KYQDP +AD ++++Q+ELDETK +LHKTI+SVLARGEKLD L+++S +LS  S+MFYK AKK N CC I
Sbjct:    1 MKLYSVSILRFDPK---PVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVT--LSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKKQNSCCII 196          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_CANGA (Synaptobrevin homolog YKT6 OS=Candida glabrata GN=YKT6 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.925e-46
Identity = 101/227 (44.49%), Postives = 141/227 (62.11%), Query Frame = 2
Query:   29 YFFSLFKKPNDAESDEPNNFHSRRRMKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            Y+  +F+ P +  SDE                           + L    D+S FG+F+R+SV +F+ F A TV  RT  GQRQSV+   Y  H Y R+ G+C +   D  YPVR +++LLN+VLDEY   +  + W++  A N       L+  ++KYQDPA+AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MFYKQAKKTN CC I+
Sbjct:    4 YYIGVFRSPAEQSSDEK-------------------------ALELTEVKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYARSEGICGVLITDKDYPVRPAYTLLNKVLDEYLVAHPADQWKSITATNDSLKMAELSTYISKYQDPAQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKTNSCCIIM 205          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_DEBHA (Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.011e-45
Identity = 95/202 (47.03%), Postives = 136/202 (67.33%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MKI  + +L+    G   + L +A D+S F +F+R+ V +F+ F + TV +RT  GQRQS++   Y  H+Y R+ GL  +   D  YPVR +++L+N++L+EY     +  W    A N    +  L   + KYQDP++AD ++K+Q+ELDETKI+LHKTI+SVL RGEKLDSLV+KS  LS++S+MFYKQAKKTN CC I+
Sbjct:    1 MKIYYIGILRIG--GEKALELTSARDLSQFSFFERNGVSQFMTFFSETVSQRTQAGQRQSIEEGNYIGHTYTRSEGLACVIITDKEYPVRPAYTLINKILEEYLSLHPQKDWANISATNASFNYDNLEHYIKKYQDPSQADSIMKVQQELDETKIVLHKTIESVLQRGEKLDSLVDKSEALSSSSRMFYKQAKKTNSCCIIM 200          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_YEAST (Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae GN=YKT6 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.137e-45
Identity = 92/188 (48.94%), Postives = 132/188 (70.21%), Query Frame = 2
Query:  146 GSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            G   + L+   D+S FG+F+RSSV +F+ F A TV  RT  GQRQS++   Y  H Y R+ G+C +   D  YPVR +++LLN++LDEY   +  E W    + ++      L+  ++KYQDP++AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MFYKQAKK+N CC I+
Sbjct:   13 GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKSNSCCIIM 200          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_KLULA (Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis GN=YKT6 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.144e-44
Identity = 98/202 (48.51%), Postives = 139/202 (68.81%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MKI  + VL+ + D +  + L++  D+S FG+F+R+SV +F+ F + TV  RT  GQRQSV+   Y  H Y R  G+C +   D  YPVR +++LLN+VLDEY        W+   ++D+      L+  + KYQDP++AD ++++Q+ELDETKI LHKTI++VL RGEKLD+LV+KS  LSAAS+MFYKQAKKTN CC ++
Sbjct:    1 MKIYYIGVLRNSDDKT--LELSSVKDLSQFGFFERNSVAQFMSFFSETVAGRTSAGQRQSVEEGNYVGHVYARPEGICGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPIQWKDVTESDDSLKLKELDIYIAKYQDPSQADAIMRVQQELDETKITLHKTIENVLQRGEKLDNLVDKSESLSAASRMFYKQAKKTNSCCIVM 200          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_YARLI (Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.494e-44
Identity = 96/202 (47.52%), Postives = 143/202 (70.79%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTA-QADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+  + +L+  P+  + V LA+A D+S + +F+RS+V +   F+A TV  RT PGQRQSV+  +Y  H+Y R+ GL  +   D  YPVR +++LLN+VL+EY  K+    W  A +A +    P L + + +YQDP +AD ++++Q+ELDETKI+LHKTI+SVLARGE+LD+LV+KS  LS +S++F+KQAKKTN CC ++
Sbjct:    1 MKLYYIGILR--PNKPEAVQLASASDLSSYSWFERSTVGQAFTFLAETVIPRTEPGQRQSVEENDYVGHAYLRSDGLGGVIITDQEYPVRVAYTLLNKVLEEYLTKHPKAEWENAKEASSKLAMPELEDYVKRYQDPHQADAIMRVQQELDETKIVLHKTIESVLARGERLDTLVDKSEALSQSSKIFFKQAKKTNSCCILM 200          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_BOVIN (Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.486e-40
Identity = 93/201 (46.27%), Postives = 126/201 (62.69%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+ +L VL      S  V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R +F+LL +VLDE+ K      W T   D ++ +  L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLYKGE--SKTVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPTGSPDTIR-YSGLDSQLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGIQSKAFYKTARKQNSCCAIM 198          
The following BLAST results are available for this feature:
BLAST of GO242170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YKT61_ARATH6.830e-9886.43VAMP-like protein YKT61 OS=Arabidopsis thaliana GN... [more]
YKT62_ARATH6.207e-8374.63VAMP-like protein YKT62 OS=Arabidopsis thaliana GN... [more]
YKT6_ASHGO4.202e-4750.00Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=Y... [more]
YKT6_SCHPO1.223e-4649.25Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
YKT6_CANGA7.925e-4644.49Synaptobrevin homolog YKT6 OS=Candida glabrata GN=... [more]
YKT6_DEBHA3.011e-4547.03Synaptobrevin homolog YKT6 OS=Debaryomyces hanseni... [more]
YKT6_YEAST5.137e-4548.94Synaptobrevin homolog YKT6 OS=Saccharomyces cerevi... [more]
YKT6_KLULA1.144e-4448.51Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis... [more]
YKT6_YARLI1.494e-4447.52Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica ... [more]
YKT6_BOVIN8.486e-4046.27Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank description818 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 964 5, mRNA sequence.