GO242078

Overview
NameGO242078
Unique NameGO242078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8642 contig Csv1_Contig8642:413..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO242078 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.154e-50
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 2
Query:    5 GTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFGSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 307
            G RM+DE DLRKYLEKWDKTYWPTYKVLD+LQKVFYRSNPAREAFVEMCADEYVQKMTF SYLYKKV PGNP+EDLKLAVNTIGSLVRANALRREMDKL++
Sbjct:  364 GKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of GO242078 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.318e-47
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 2
Query:    2 NGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFGSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 307
            NG +MIDEGDLRKYLEKWDKTY PTY+VLDVLQKVFYRSNPAREAFVEMC DEYVQKMTF SYLYK+V PG+PLED+KLAVNTIGSLVRANALRRE++KL++
Sbjct:  366 NGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of GO242078 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.958e-44
Identity = 82/102 (80.39%), Postives = 96/102 (94.12%), Query Frame = 2
Query:    2 NGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFGSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 307
            NGTRM++E DLR+YL ++D+ YWPTYKVLDVLQKVFYRSN AREAFVEMCAD+YVQ+MTF SYLYK+VVPGNPL+D+KLAVNTIGSLVRA ALRREM+K+T+
Sbjct:  362 NGTRMVEESDLRRYLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of GO242078 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.129e-27
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    2 NGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFGSYLYKKVVPGNPLEDLKLAVNTIGSLVRANAL 280
            NG R+  E DL++Y+++WDK Y  TY VLD+LQ+VFYR++  REAFVEMC+D  VQK+TF SYLYK VVP NPL  +K+   TIGSL+R NAL
Sbjct:  313 NGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
The following BLAST results are available for this feature:
BLAST of GO242078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_TOBAC6.154e-5091.09Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH8.318e-4786.27Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ2.958e-4480.39Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY31.129e-2761.29Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
back to top
Properties
Property NameValue
Genbank description726 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 871 5, mRNA sequence.