GO242008

Overview
NameGO242008
Unique NameGO242008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13787 contig Csv1_Contig13787:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO242008 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 DDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADGECKVYE 180
            DDMVKVVAWYDNEWGYSQRVVDLAHLVA+KWPG  A GSGDPLEDFC+TNPAD ECKVY+
Sbjct:  388 DDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447          
BLAST of GO242008 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 DDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADGECKVYE 180
            DDMVKVVAWYDNEWGYSQRVVDLAHLVA KWPG    GSGDPLEDFC+TNPAD ECKVYE
Sbjct:  392 DDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451          
BLAST of GO242008 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    4 DMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADGECKVYE 180
            DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+     SGDPLEDFC+ NPAD ECK+YE
Sbjct:  392 DMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451          
BLAST of GO242008 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.693e-14
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1
Query:    1 DDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 99
            DDMVKVVAWYDNEWGYSQRVVDLAHLVA  WPG
Sbjct:  361 DDMVKVVAWYDNEWGYSQRVVDLAHLVANNWPG 393          

HSP 2 Score: 26.5646 bits (57), Expect = 4.693e-14
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  122 THWRISARQTLLMGSAKFMKLKF 190
            +HW   ARQ LLM +AK M  +F
Sbjct:  402 SHWMSFARQILLMRNAKSMNNRF 424          
The following BLAST results are available for this feature:
BLAST of GO242008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
G3PB_ARATH7.426e-2788.33Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA1.267e-2688.33Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL3.229e-2280.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC4.693e-1493.94Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
back to top
Properties
Property NameValue
Genbank description656 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 799 5, mRNA sequence.