GO241760

Overview
NameGO241760
Unique NameGO241760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241760_ssr35 microsatellite GO241760_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
GO241760_ssr47 microsatellite GO241760_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13768 contig Csv1_Contig13768:1..385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:   64 MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVLV 222
            MGS T LEVILAI+LPPVGVFLRY  GVEFWICL+LT+LGYIPGIIYA+YVLV
Sbjct:    1 MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:   64 MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVLV 222
            MGS T LEVILAI+LPPVGVFLRY  GVEFWICL+LT+LGYIPGIIYA+YVLV
Sbjct:    1 MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.809e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:   64 MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVLV 222
            M S TF+EVILAI+LPPVGVFLRYG  VEFWICL+LT+LGYIPGIIYA+YVLV
Sbjct:    1 MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.517e-19
Identity = 41/52 (78.85%), Postives = 50/52 (96.15%), Query Frame = 1
Query:   64 MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVL 219
            M + TF+++I+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct:    1 MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.131e-17
Identity = 34/52 (65.38%), Postives = 48/52 (92.31%), Query Frame = 1
Query:   64 MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVL 219
            M + TF+E+ILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct:    1 MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.567e-16
Identity = 37/50 (74.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   76 TFLEVILAILLPPVGVFLRYGC-GVEFWICLMLTVLGYIPGIIYAIYVLV 222
            TFLE++LAI+LPP+GVFLR+GC  +EF ICL+LT+LGY+PGIIYA+YVLV
Sbjct:    8 TFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLV 57          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   67 GSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVL 219
            G+   +++++AI+LPP+GVFL++GCG EFWICL+LT LGYIPGIIYAIY +
Sbjct:    3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAI 53          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   67 GSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVL 219
            G+   +++++AI+LPP+GVFL++GCG EFWICL+LT LGYIPGIIYAIY +
Sbjct:    3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAI 53          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1
Query:   64 MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVL 219
            MGS  FLEV+ AI +PPVGVFLRYG G+EFW+CL+LT+  +IPG+IYAIYVL
Sbjct:    1 MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50          
BLAST of GO241760 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.736e-15
Identity = 31/48 (64.58%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   76 TFLEVILAILLPPVGVFLRYGCGVEFWICLMLTVLGYIPGIIYAIYVL 219
            T +++ILAI+LPP+GVF ++GCG+EFWICL+LT  GY+PGIIYA++V+
Sbjct:    7 TCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVI 54          
The following BLAST results are available for this feature:
BLAST of GO241760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LT01_HORVU5.214e-2084.91Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL5.214e-2084.91Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
LT02_HORVU6.809e-2083.02Low temperature-induced protein lt101.2 OS=Hordeum... [more]
RCI2A_ARATH1.517e-1978.85Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
RCI2B_ARATH4.131e-1765.38Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ4.567e-1674.00Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LTI6B_ORYSJ7.791e-1664.71Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI7.791e-1664.71Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
RC21_ARATH1.329e-1571.15UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
LTI6A_ORYSJ1.736e-1564.58Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank description408 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 540 5, mRNA sequence.