GO241715

Overview
NameGO241715
Unique NameGO241715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241715_ssr723 microsatellite GO241715_ssr723:723..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2798 contig Csv1_Contig2798:172..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.312e-39
Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  192 ADEDSGNQSNKKDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGN 563
            AD    +    + K+++ G+ED                   QREPR +F+TKSE+DHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERS+QDPTVVITTYEGQHNH  P  LRG+
Sbjct:  117 ADHPGEDSGKSRRKRELVGEED---QISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGS 237          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39
Identity = 88/160 (55.00%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  315 QREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGN-XXXXXXXXXXXXXXMRPTFP---QEFLLSQFLPSANNNQGVNIPSSMYYQNLNISPXXXXXXLGNQVPDYGLLQDL 782
            +RE R AF+TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERS+QDP++VITTYEG+HNH  P+TLRG                +  +FP   Q+FL+ +  P+  N Q V    S+ Y++               V DYGLLQD+
Sbjct:  119 EREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKHSPA--NYQSV---GSLSYEH-GHGTSSYNFNNNQPVVDYGLLQDI 272          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.360e-38
Identity = 76/123 (61.79%), Postives = 89/123 (72.36%), Query Frame = 3
Query:  192 ADEDSGNQSNK-KDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLR 557
            AD   G  S K + K++V+  + G+DD               ++EPR +F+TK+E+DHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERSYQDPTVVITTYE QHNH  P   R
Sbjct:  126 ADHHPGEDSGKIRKKREVR--DGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRR 246          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.988e-34
Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  183 EAGADEDSGNQSNKKDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGN 563
            EA  D +SG +   KD+++  G +  +                  RE RFAFLTKS+ID+L+DGYRWRKYGQKAVKNSPYPRSYYRCT+  C VKKRVERS  DP++V+TTYEGQH H  P T RG+
Sbjct:  162 EAANDNNSGKEVTVKDQEE--GDQQQEQKGTKPQLKAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGH 286          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.476e-33
Identity = 67/126 (53.17%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  186 AGADEDSGNQSNKK--DKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLR 557
            + A  ++ N+   K  D ++  G++  +                 QRE R AF+TKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS++DP+ V+TTYEGQH H  P T R
Sbjct:  112 SSASSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSR 237          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.229e-32
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 3
Query:  318 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRG 560
            R+PRFAF+TKS++D+LEDGYRWRKYGQKAVKNSP+PRSYYRCT+ +CTVKKRVERS  DP++VITTYEGQH HQ     RG
Sbjct:  131 RQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFPRG 211          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.651e-27
Identity = 66/174 (37.93%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  195 DEDSGNQSNKKDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNXXXXXXXXXXXXXXM-RPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLN 713
            +  S    N  D+++  G+E                    ++ P+ +F+T+SE+ HL+DGY+WRKYGQK VK+SP+PR+YYRCT+  C VKKRVERS+ DP+ VITTYEGQH H  P  +                 +  PT P + L         NNQ    PSS   + +N
Sbjct:   61 NSSSSEAVNGDDEEEEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPSNGSASRAHIGLPTLPPQLL-------DYNNQQQQAPSSFGTEYIN 227          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.000e-26
Identity = 57/124 (45.97%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  198 EDSGNQSNKKDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQR---EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRG 560
            E S +   +KD       ++ D+D                R   EP+    TKSE+D L+DGYRWRKYGQK VK +P+PRSYY+CT+  CTV+K VER+  D   VITTYEG+HNH  PA   G
Sbjct:  247 ESSDDSGYRKDHDDDDDDDEDDEDLPASKIRRIDGVSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNG 370          

HSP 2 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  366 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRG 560
            +DGY WRKYGQK +K   YPRSYY+CT   C VKK+VERS  D  +    Y+GQH+H+ P   RG
Sbjct:  167 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERS-SDGQITQIIYKGQHDHERPQNRRG 230          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.000e-26
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 3
Query:  318 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNH 536
            REPRF F T SE+D L+DGYRWRKYGQK VKN+ +PRSYYRCT  KC VKKRVER   DP +VITTYEG+H H
Sbjct:  207 REPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of GO241715 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.114e-25
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  318 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNH 536
            REPRF F TKS++D L+DGY+WRKYGQK VKNS +PRSYYRCT   C VKKRVER  +D  +VITTYEG+HNH
Sbjct:  129 REPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
The following BLAST results are available for this feature:
BLAST of GO241715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
WRK28_ARATH2.312e-3962.10Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK71_ARATH8.784e-3955.00Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRKY8_ARATH4.360e-3861.79Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK48_ARATH4.988e-3455.91Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK23_ARATH2.476e-3353.17Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK57_ARATH1.229e-3276.54Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK68_ARATH2.651e-2737.93Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK58_ARATH5.000e-2645.97Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK13_ARATH5.000e-2672.60Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK12_ARATH1.114e-2571.23Probable WRKY transcription factor 12 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank description363 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 493 5, mRNA sequence.