GO241583

Overview
NameGO241583
Unique NameGO241583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4631 contig Csv1_Contig4631:74..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2A_ARATH (Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.408e-85
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCIL 541
            MECVFGLVG+GFAI+ ADTSAVHSIL+HK+NEDKIMVLDSHKL+AASGEPGDRVQFTE++QKNVSLY+FRNGIPLTTAAAANFTRGELATALRK+PY VNIL+AGYD E+G SLYYIDYIATLHKVDK AFGYGSYFSLS MDRH+ S MSVEEA++LVDKCIL
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCIL 164          

HSP 2 Score: 44.2838 bits (103), Expect = 1.408e-85
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            EIRSRLVVAPPNFVIKIVDKD
Sbjct:  165 EIRSRLVVAPPNFVIKIVDKD 185          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2B_ARATH (Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 6.939e-85
Identity = 141/164 (85.98%), Postives = 154/164 (93.90%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCIL 541
            MECVFGLVG+GFAI+ ADTSAVHSIL+HK+ EDKIM LDSHKL+AASGEPGDRVQFTE++QKNVSLYQFRNGIPL+TAAAANFTRGELATALRK+PY VNIL+AGYDKE G SLYYIDYIATLHKVDK AFGYGSYFSLS MDRH+ S MSVEEA++LVDKCIL
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCIL 164          

HSP 2 Score: 43.8986 bits (102), Expect = 6.939e-85
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            EIRSRLV+APPNFVIKIVDKD
Sbjct:  165 EIRSRLVIAPPNFVIKIVDKD 185          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_ORYSJ (Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica GN=PBD1 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 6.348e-74
Identity = 126/163 (77.30%), Postives = 143/163 (87.73%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            MECV G+VG  FA++ ADTSAV SILVHK++EDK+MVLDSHKL+ ASGEPGDRVQFTEFIQKN+ LYQFRN IPL+TAA ANFTRGELATALRK+PY VN+LLAGYD + G SLYYIDYIAT HK++K AFGYGSYF LS+MD+ +   MSVEEAVDLVDKCI
Sbjct:    1 MECVIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIATFHKIEKGAFGYGSYFCLSLMDKLYRPDMSVEEAVDLVDKCI 163          

HSP 2 Score: 36.965 bits (84), Expect = 6.348e-74
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            EIR RLVVAP NF+IKIVDK+
Sbjct:  165 EIRLRLVVAPQNFIIKIVDKE 185          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_DICDI (Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.139e-42
Identity = 80/165 (48.48%), Postives = 113/165 (68.48%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKET---GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKC 535
            ME +      G  + +AD+S  HSI+  K +EDKI+ +D HKL+ ++GE GDRVQFTE+I KN+ LY  RN  P++T AAANF R ELAT++R  PY +N++LAGYDKE    G SLYY+DY+ +L K++    GY SYF L ++DRH    +S+E+ ++L+  C
Sbjct:    1 METLLAFKVKGGVLCLADSSVNHSIVKMKDDEDKILEIDGHKLLLSAGEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANFIRNELATSIRSHPYSINLILAGYDKEVEDGGTSLYYMDYLGSLQKLNFGCHGYASYFLLGLLDRHHKCDLSLEDGINLMHLC 165          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_RAT (Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.030e-38
Identity = 77/164 (46.95%), Postives = 110/164 (67.07%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E AV+L+ KC+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCL 164          

HSP 2 Score: 24.2534 bits (51), Expect = 7.030e-38
Identity = 7/21 (33.33%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            E++ R ++  P F ++++DKD
Sbjct:  166 ELQKRFILNLPTFSVRVIDKD 186          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_MOUSE (Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.030e-38
Identity = 77/164 (46.95%), Postives = 110/164 (67.07%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E AV+L+ KC+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCL 164          

HSP 2 Score: 24.2534 bits (51), Expect = 7.030e-38
Identity = 7/21 (33.33%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            E++ R ++  P F ++++DKD
Sbjct:  166 ELQKRFILNLPTFSVRVIDKD 186          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_HUMAN (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.025e-37
Identity = 77/164 (46.95%), Postives = 110/164 (67.07%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E AV+L+ KC+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCL 164          

HSP 2 Score: 22.7126 bits (47), Expect = 2.025e-37
Identity = 7/21 (33.33%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            E++ R ++  P F ++I+DK+
Sbjct:  166 ELQKRFILNLPTFSVRIIDKN 186          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_BOVIN (Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.832e-37
Identity = 77/164 (46.95%), Postives = 111/164 (67.68%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E+AV+L+ KC+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISREKAVELLRKCL 164          

HSP 2 Score: 21.557 bits (44), Expect = 5.832e-37
Identity = 6/21 (28.57%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            E++ R ++  P F ++I+D++
Sbjct:  166 ELQKRFILNLPTFSVRIIDRN 186          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_NEUCR (Probable proteasome subunit beta type-2 OS=Neurospora crassa GN=15E6.60 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.344e-35
Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKET-GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKC 535
            M  + G+ G  F I+ A  +A+    + K+++DK   L+ H L+A SGE GD VQF E+ Q N  LY  RNG  L+ +A ANF RGELAT+LR + PY VN+LL G D  T  PSLY++DY+A+L KV  AA GY  Y+ LS++D+H H  +++ + + L++ C
Sbjct:    1 MYVLLGITGKDFTIIAASKAAMRGATILKASDDKTRSLNKHTLMAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATSLRSRKPYNVNLLLGGVDPITHKPSLYWLDYLASLAKVPYAAHGYAQYYCLSILDKHHHPDITLHQGIKLLNLC 164          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.546e-33
Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            MEC FG+ G  + IL +D  A  SI+  KS+E+K+  L  H  +A SGEPGD   F E+I++N+ LY  RN  PL   AA+ + R  LA A+R + PY VN+LL G+D  T  P LY+IDY+ T   V  AA G G Y SLS MD+ ++  M  +E VDL+ KCI
Sbjct:    1 MECSFGITGKDYVILASDMGAGRSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLLLGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDMDKKEGVDLLRKCI 165          
The following BLAST results are available for this feature:
BLAST of GO241583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSB2A_ARATH1.408e-8586.59Proteasome subunit beta type-2-A OS=Arabidopsis th... [more]
PSB2B_ARATH6.939e-8585.98Proteasome subunit beta type-2-B OS=Arabidopsis th... [more]
PSB2_ORYSJ6.348e-7477.30Proteasome subunit beta type-2 OS=Oryza sativa sub... [more]
PSB2_DICDI9.139e-4248.48Proteasome subunit beta type-2 OS=Dictyostelium di... [more]
PSB2_RAT7.030e-3846.95Proteasome subunit beta type-2 OS=Rattus norvegicu... [more]
PSB2_MOUSE7.030e-3846.95Proteasome subunit beta type-2 OS=Mus musculus GN=... [more]
PSB2_HUMAN2.025e-3746.95Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
PSB2_BOVIN5.832e-3746.95Proteasome subunit beta type-2 OS=Bos taurus GN=PS... [more]
PSB2_NEUCR6.344e-3545.12Probable proteasome subunit beta type-2 OS=Neurosp... [more]
PSB2_CRYNE4.546e-3346.67Probable proteasome subunit beta type-2 OS=Cryptoc... [more]

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Properties
Property NameValue
Genbank description231 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 348 5, mRNA sequence.